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227 Open 739 Closed
227 Open 739 Closed
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Issues list

I believe this text mining result was false. The paper looked at a rat model with higher and lower glucose levels but it doesn't look like they actually did transcriptomics for this portion of their experiment. Their cell model results are here https://ncbi.nlm.nih.gov/geo/geo2r/?acc=GSE169649 and even if you accept the jump of O-GlyNAc being a proxy of glucose, the numbers don't show any increase in KMT2A that I could find. The "Title" sections had conflicting information from the "Treatment" sections but analyzing based on Treatment (except for day 12) looked like it had more sensical PCA plots. Even then, I analysed D0, D12, D30, and D70 and never found an instance of KMT2A being elevated.
#980 opened Dec 12, 2024 by TranslatorIssueCreator
Ordering of results from "filter by text" are potentially confusing UI - display confusion on or overlooking information
#979 opened Nov 12, 2024 by khanspers
CTD should not have "Treats"
#978 opened Nov 9, 2024 by cbizon
@vdancik
4
SPOKE not returning sources
#977 opened Nov 9, 2024 by cbizon
@brettasmi @suihuang-ISB
Ruxolitinib proper is not a choice to search on SRI Tooling
#976 opened Nov 8, 2024 by sstemann
@gaurav
2
BTE Clinical Trials Edges Missing KS/KP EPC in the UI
#975 opened Nov 8, 2024 by sstemann
@andrewsu @gprice1129 @dnsmith124
PFOCR Evidence doesn't seem like it's showing up correctly in the evidence modal
#974 opened Nov 8, 2024 by TranslatorIssueCreator
Can I know if a clinical trial has been stopped?
#972 opened Nov 7, 2024 by TranslatorIssueCreator
There are two different results for Bevacizumab within this query. They have different paths and evidence.
#970 opened Nov 6, 2024 by TranslatorIssueCreator
@gaurav
1
Pathfinder UI gives dozens of choices for IL6 on autocomplete pathfinder UI - term selection identification of the specific node and context to be selected for a query
#969 opened Nov 1, 2024 by jaredroach
Publication listed twice for "Akt1 Has Increased Activity Or Abundance Caused By Semaglutide" bug Something isn't working
#968 opened Oct 29, 2024 by khanspers
Duplicated supporting paths
#967 opened Oct 29, 2024 by khanspers
Tooltip when hovering over a predicate which contains searched text UI - display confusion on or overlooking information
#966 opened Oct 29, 2024 by sstemann
@dnsmith124
1
Two paths because one predicate is "has phenotype" and another predicate is "phenotype of"
#965 opened Oct 24, 2024 by sstemann
@andrewsu @gprice1129 @dnsmith124
3
I think this inferred result is in the wrong direction.
#964 opened Oct 23, 2024 by TranslatorIssueCreator
Two direct paths from same primary source
#962 opened Oct 21, 2024 by karafecho
@dkoslicki
Workspace help page image needs to be updated to match the new design UI - display confusion on or overlooking information
#961 opened Oct 18, 2024 by dnsmith124
@dnsmith124
1
Can you confirm whether or not there are no results for this or after a while if the system times out. I'm doing lots of searches but I am, in fact, a human and am curious what is going on. Thanks, Helen
#957 opened Oct 1, 2024 by TranslatorIssueCreator
"Streptomycin treats Leukemia" based on bad text-mining results
#956 opened Sep 27, 2024 by khanspers
1
Duplicated results chemical conflation normalization relates to or otherwise handled by node norm or name resolver - separate from autocomplete
#953 opened Sep 21, 2024 by khanspers
@gaurav
2
Drug synonym is sometimes returned instead of the drug listed for results from clinicaltrials.gov
#952 opened Sep 20, 2024 by khanspers
Text Mined Cooccurrence KP missing TRAPI 1.5 endpoints trapi warning
#949 opened Sep 14, 2024 by isbluis
@bill-baumgartner
2
SPOKE often responds with 500 error in Test bug Something isn't working
#948 opened Sep 12, 2024 by isbluis
@brettasmi @suihuang-ISB
3
Pathfinder Results Not Displayed in UI pathfinder
#945 opened Sep 11, 2024 by sstemann
@MarkDWilliams @gprice1129
@dnsmith124 @Genomewide
UI not properly compressing support paths in Pathfinder pathfinder UI - display confusion on or overlooking information
#944 opened Sep 10, 2024 by dnsmith124
@dnsmith124
ProTip! Follow long discussions with comments:>50.