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ci with mamba to support the stack #3

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ci with mamba to support the stack #3

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31 changes: 24 additions & 7 deletions .github/workflows/python-app.yml → .github/workflows/ci-test.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -10,22 +10,39 @@ on:
branches: [ main ]

jobs:
build:

lsst-tests:
name: tests
strategy:
matrix:
pyver: [3.8]
runs-on: ubuntu-latest

steps:
- name: Cancel Previous Runs
uses: styfle/[email protected]
with:
access_token: ${{ github.token }}
- uses: actions/checkout@v2
- name: Set up Python 3.8
uses: actions/setup-python@v2
- uses: conda-incubator/setup-miniconda@v2
with:
python-version: "3.8"
python-version: ${{ matrix.pyver }}
channels: conda-forge,defaults
channel-priority: strict
show-channel-urls: true
- name: Install dependencies
shell: bash -l {0}
run: |
python -m pip install --upgrade pip
python -m pip install --upgrade pytest
python -m pip install flake8 pytest pytest-cov coveralls
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi

conda config --set always_yes yes
conda install --quiet --yes mamba
mamba install --quiet --yes --file requirements.txt
mamba install -q -y stackvana=0 lsstdesc-weaklensingdeblending

pip install --no-deps git://github.com/sibirrer/lenstronomy.git
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here I would install the pypi version of lenstronomy rather than the main branch on the GitHub repo.
I am not even sure this is required since in the requirements.txt file you have already set a requirement to lenstronomy (pypi version)

pip install --no-deps git://github.com/LSSTDESC/gcr-catalogs.git
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same comment as for lenstronomy concerning the mentioning in the requirements.txt file.
Then this line seems to be where GitHub Actions fail (but I guess in mamba through requirements.txt. It might be due to install_requires[] for the GCRCatalogs package in their setup.py file or simply because there is no anaconda or pypi version. Do you know whether some other DESC specific packages is using this package and does GitHub Actions/CI using it?


python -m pip install .
- name: Lint with flake8
run: |
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