Merge pull request #22 from LaurenGonsalves/check-modules

Updated kneaddata db for hyak use
HoffLab · Apr 29, 2024 · cd1397a · cd1397a
2 parents cf4aca6 + 6131238
commit cd1397a
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 1 deletion.
diff --git a/modules/local/kneaddata/database/main.nf b/modules/local/kneaddata/database/main.nf
@@ -20,6 +20,8 @@ process KNEADDATA_DATABASE {
     script:
     def args = task.ext.args ?: ''
     """
+    https_proxy=http://klone-dip1-A-ib:3128
+    export https_proxy
     kneaddata_database \\
         --download $kneaddata_db_type bowtie2 kneaddata_${kneaddata_db_type}
 

diff --git a/modules/nf-core/metaphlan/makedb/main.nf b/modules/nf-core/metaphlan/makedb/main.nf