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@HoffLab

HoffLab

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  1. biobakerymgx biobakerymgx Public

    Read-preprocessing, taxonomic classification, functional classification, strain analysis, and pangenome analysis using bioBakery tools

    Nextflow 7

  2. caganalyzer caganalyzer Public

    A pipeline for identifying and analyzing co-abundant gene clusters (CAGs) in microbiome studies

    Nextflow 1

  3. phageannotator phageannotator Public

    Nextflow 1

  4. bactopia bactopia Public

    Forked from bactopia/bactopia

    A flexible pipeline for complete analysis of bacterial genomes

    Nextflow 2

  5. SaIsolates SaIsolates Public

    Jupyter Notebook

Repositories

Showing 5 of 5 repositories
  • phageannotator Public
    HoffLab/phageannotator’s past year of commit activity
    Nextflow 0 MIT 1 1 0 Updated Aug 21, 2024
  • SaIsolates Public
    HoffLab/SaIsolates’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 25, 2024
  • bactopia Public Forked from bactopia/bactopia

    A flexible pipeline for complete analysis of bacterial genomes

    HoffLab/bactopia’s past year of commit activity
    Nextflow 0 MIT 73 0 0 Updated Jun 14, 2024
  • biobakerymgx Public

    Read-preprocessing, taxonomic classification, functional classification, strain analysis, and pangenome analysis using bioBakery tools

    HoffLab/biobakerymgx’s past year of commit activity
    Nextflow 0 MIT 7 15 1 Updated Apr 29, 2024
  • caganalyzer Public

    A pipeline for identifying and analyzing co-abundant gene clusters (CAGs) in microbiome studies

    HoffLab/caganalyzer’s past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Apr 9, 2024

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