include qc report in a separate step #98

	---
	name: Roxygen 📄

	on:
	pull_request:
	types:
	- opened
	- synchronize
	- reopened
	- ready_for_review
	branches:
	- main
	push:
	branches:
	- main
	workflow_call:

	concurrency:
	group: roxygen-${{ github.event.pull_request.number \|\| github.ref }}
	cancel-in-progress: true

	jobs:
	roxygen:
	name: ${{ vars.CI_IMAGE }}
	runs-on: ubuntu-latest
	container:
	image: ${{ vars.CI_IMAGE }}
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

	steps:
	- name: Checkout project ⬇️
	uses: actions/checkout@v4

	- name: Install package dependencies 📄
	uses: zsigmas/dv.templates/.github/actions/dependencies@include_qc_separate_steps

	- name: Generate man pages 📄
	run: \|
	Rscript -e 'roxygen2::roxygenize()'
	if [[ -n $(git status -s \| grep -E "man\|DESCRIPTION") ]]
	then
	ROXYGEN_VERSION="$(Rscript -e 'packageVersion("roxygen2")' \| awk '{print $NF}')"
	echo "⚠️ Manuals are not up-to-date with roxygen comments!"
	echo "Here are the differences:"
	git diff man/* DESCRIPTION
	echo -e "\n Please rerun the following command on your workstation and push your changes"
	echo "--------------------------------------------------------------------"
	echo "roxygen2::roxygenize('.')"
	echo "--------------------------------------------------------------------"
	echo "ℹ️ roxygen2 version that was used in this workflow: $ROXYGEN_VERSION"
	echo "Please ensure that the 'RoxygenNote' field in the DESCRIPTION file matches this version"
	exit 1
	else
	echo "👍 Manuals are up-to-date with roxygen comments"
	fi
	shell: bash

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