Skip to content
@BCCDC-PHL

BC Centre for Disease Control Public Health Laboratory

The BCCDC Public Health Laboratory is the primary public health and reference diagnostic testing facility for British Columbia.

Pinned Loading

  1. ncov2019-artic-nf ncov2019-artic-nf Public

    Forked from connor-lab/ncov2019-artic-nf

    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

    Nextflow 3 1

  2. illumina-uploader illumina-uploader Public

    Watch for new files in Illumina sequencer and upload to remote server

    Python 3 1

  3. mpxv-artic-nf mpxv-artic-nf Public

    Nextflow 2 4

  4. covid-qc covid-qc Public

    Static site for displaying COVID-19 sequencing quality control data

    Clojure 4

Repositories

Showing 10 of 121 repositories
  • tbprofiler-nf Public

    Nextflow Wrapper for TBProfiler

    BCCDC-PHL/tbprofiler-nf’s past year of commit activity
    Python 4 2 4 1 Updated Nov 22, 2024
  • basic-sequence-qc Public

    Generate some basic quality control statistics on an arbitrary set of illumina fastq sequence files.

    BCCDC-PHL/basic-sequence-qc’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Nov 22, 2024
  • snippy-core-phylogenomics Public
    BCCDC-PHL/snippy-core-phylogenomics’s past year of commit activity
    Nextflow 1 2 4 1 Updated Nov 22, 2024
  • fluflo Public

    Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.

    BCCDC-PHL/fluflo’s past year of commit activity
    Nextflow 8 GPL-3.0 4 0 0 Updated Nov 14, 2024
  • plasmid-assembly Public
    BCCDC-PHL/plasmid-assembly’s past year of commit activity
    Nextflow 0 MIT 0 3 0 Updated Nov 8, 2024
  • snippy-variants Public

    Perform read mapping and variant calling using snippy

    BCCDC-PHL/snippy-variants’s past year of commit activity
    Nextflow 0 1 4 3 Updated Nov 4, 2024
  • fluviewer-nf Public

    Nextflow pipeline for influenza A whole genome sequence analysis

    BCCDC-PHL/fluviewer-nf’s past year of commit activity
    Nextflow 0 1 6 3 Updated Oct 31, 2024
  • mpxv-artic-nf Public
    BCCDC-PHL/mpxv-artic-nf’s past year of commit activity
    Nextflow 2 4 1 0 Updated Oct 30, 2024
  • process-nanopore Public

    A pipeline for processing raw sequence data from nanopore runs

    BCCDC-PHL/process-nanopore’s past year of commit activity
    Python 0 0 0 0 Updated Oct 29, 2024
  • auspice-docker Public
    BCCDC-PHL/auspice-docker’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 23, 2024
View all repositories

Most used topics

Loading…