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Update analyses/cell-type-wilms-tumor-06/scripts/06_infercnv.R
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Co-authored-by: Stephanie Spielman <[email protected]>
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maud-p and sjspielman authored Oct 29, 2024
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2 changes: 1 addition & 1 deletion analyses/cell-type-wilms-tumor-06/scripts/06_infercnv.R
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# USAGE:
# Rscript 06_infercnv.R \
# --sample_id SCPCS000179
# --reference one of none, immune, endothelium, both
# --reference one of none, immune, endothelium, both, pull

# OUTPUT :
# For every condition, the `infercnv` object and final `infercnv` heatmap are saved in the corresponding {sample_id}/06_infercnv results subfolder
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