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Issues list

Regenerate notebooks for cell-type-wilms-tumor-06
#906 opened Nov 20, 2024 by sjspielman
@sjspielman
9
Update report to compare clustering results to cell types and marker gene sets in Ewing module analysis
#896 opened Nov 19, 2024 by allyhawkins
@allyhawkins
Exploratory notebook for defining consensus cell types analysis
#889 opened Nov 15, 2024 by allyhawkins
2
Assign cell ontology identifiers to cell types in CellAssign reference analysis
#887 opened Nov 15, 2024 by allyhawkins
@allyhawkins
Decrease size of docker image for Ewing's module
#884 opened Nov 15, 2024 by allyhawkins
@allyhawkins
4
Integration of the SCPCP000006 Wilms tumor dataset analysis
#857 opened Nov 5, 2024 by maud-p
3 tasks
Improve Wilms Tumor Dataset Annotation (SCPCP000006) - explore predicted.score and has_cnv.score thresholds analysis
#856 opened Nov 5, 2024 by maud-p
3 tasks
2
Modify/explore clustering for Wilms tumor annotation (SCPCP000014) analysis
#840 opened Oct 24, 2024 by JingxuanChen7
First draft of annotations for SCPCP000006 analysis
#839 opened Oct 24, 2024 by maud-p
1
Docs request: FAQ about gene id conversion
#837 opened Oct 22, 2024 by jashapiro
1
cell type/tumor annotation for ETP T-ALL (SCPCP000003) analysis
#822 opened Oct 16, 2024 by UTSouthwesternDSSR
Attempt to identify tumor cells in those non-ETP samples without B cells (SCPCP000003) analysis
#811 opened Oct 15, 2024 by UTSouthwesternDSSR
Keep tabs on Rhtslib installation in Dockerfiles OpenScPCA admin Issue for an OpenScPCA maintainer
#803 opened Oct 8, 2024 by sjspielman
Add docs about rOpenScPCA and hello-clusters
#799 opened Oct 7, 2024 by sjspielman
@sjspielman
Add notebook to demonstrate sweeping cluster parameters with rOpenScPCA
#797 opened Oct 7, 2024 by sjspielman
@sjspielman
Add notebook to demonstrate clustering with rOpenScPCA
#796 opened Oct 7, 2024 by sjspielman
1
@sjspielman
1
05_ aneuploidy inference using copykat and infercnv for a subselection of Wilms tumor from SCPCP000006 analysis
#790 opened Oct 7, 2024 by maud-p
3
celltype/tumor annotation for non-ETP T-ALL (SCPCP000003) analysis
#787 opened Oct 1, 2024 by UTSouthwesternDSSR
Initiation of SCPCP000001 analysis
#778 opened Sep 24, 2024 by georginaalbadri
5
Annotation (label transfer) exploration for SCPCP000006 analysis
#774 opened Sep 23, 2024 by maud-p
Celltype annotation for non-ETP ALL (SCPCP000003) analysis
#761 opened Sep 13, 2024 by UTSouthwesternDSSR
DSRCT Dataset Analysis (SCPCP000013) #583 analysis
#701 opened Aug 7, 2024 by danhtruong
1
Cell Type Annotation of Osteosarcoma snRNA-seq Data (SCPCP000017) analysis
#687 opened Aug 3, 2024 by yutarohtanaka
1
Wilms Tumor Dataset Annotation (SCPCP000006) #635 analysis
#671 opened Jul 29, 2024 by maud-p
2
Future idea: Use SingleR with SCPCL000822 and SCPCL000824 as references to annotate remaining Ewing samples analysis
#668 opened Jul 25, 2024 by allyhawkins
ProTip! What’s not been updated in a month: updated:<2024-10-26.