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20 Open 41 Closed
20 Open 41 Closed
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Issues list

[RUNNING] What does GCAE converge to? Why to a NMSE of 1?
#61 opened Jun 29, 2022 by richelbilderbeek
24
Plot NMSE versus r_squared
#60 opened Jun 23, 2022 by richelbilderbeek
[RUNNING] Partially re-run 42
#59 opened Jun 22, 2022 by richelbilderbeek
@richelbilderbeek
10
No matches found for 'gcae_experiment_params_filename'
#58 opened Jun 17, 2022 by richelbilderbeek
Run with autoencoder-only for 2,3,5,10,25
#56 opened May 20, 2022 by richelbilderbeek
Do autoencode-only with latent layer of 3 neurons
#55 opened May 20, 2022 by richelbilderbeek
@richelbilderbeek
6
What is the relation between genotype concordance and R2?
#51 opened May 20, 2022 by richelbilderbeek
[RUNNING] Do a long run with M3d and p1
#50 opened May 20, 2022 by richelbilderbeek
4
Determine if a SNP is kept in the autoencoder when used for prediction
#49 opened May 20, 2022 by richelbilderbeek
Compare with regular prediction: PLINK assoc_qt and betas
#46 opened May 19, 2022 by richelbilderbeek
Do a run on the many-SNPs data with only autoencoder functionality for all models
#41 opened May 16, 2022 by richelbilderbeek
Notes meeting Daniil 2022-05-12
#40 opened May 12, 2022 by richelbilderbeek
2 tasks
Completely separate internal/training and external/validation sets low Low priority
#39 opened May 11, 2022 by richelbilderbeek
Do a SNP injection, to see if NN has learned genotypes
#38 opened May 11, 2022 by richelbilderbeek
1
Compare with regular prediction: latent layer and linear regression
#37 opened May 11, 2022 by richelbilderbeek
Compare with regular prediction: UMAP and linear regression
#36 opened May 11, 2022 by richelbilderbeek
Fix zipping
#35 opened May 10, 2022 by richelbilderbeek
1
Compare with regular prediction: PLINK PCA and fit linearly
#34 opened May 10, 2022 by richelbilderbeek
Fake Bianca
#25 opened Apr 21, 2022 by richelbilderbeek
Allow gcaer to run GCAE from any location low Low priority
#10 opened Mar 21, 2022 by richelbilderbeek
1 task done
2
ProTip! Adding no:label will show everything without a label.