added changes to path also to testconfig

.tests/integration/config_basic/config.yaml

@@ -18,7 +18,6 @@ data:
     hlatyping:
       MHC-I:
       MHC-II:
-    readgroups: 
 
 ### pre-processing (only applied on fastq reads)
 preproc: 
@@ -80,14 +79,15 @@ indel:
   sliprate: 0.1  # frequency of slippage when it is supsected
 
 quantification:
-  activate: true
   mode: BOTH # RNA, RNA or BOTH
 
 hlatyping:
   class: I # I, II or BOTH
   # specific path for class II hlatyping (only required when class: II, or BOTH)
   MHC-I_mode: DNA, RNA # DNA, RNA, or BOTH (if empty alleles have to be specified in custom)
   MHC-II_mode: BOTH # DNA, RNA, or BOTH (if empty alleles have to be specified in custom)
+
+  hlahd_path: ./hlahd.1.7.0/
   freqdata: ./hlahd_files/freq_data/ 
   split: ./hlahd_files/HLA_gene.split.txt
   dict: ./hlahd_files/dictionary/