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adjusted annotation path
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riasc committed Mar 10, 2024
1 parent 1254674 commit d656fb2
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion workflow/rules/ref.smk
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ rule get_genome:
"""
curl -L -o {output.genome}.gz https://ftp.ensembl.org/pub/release-{params.release}/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna_sm.primary_assembly.fa.gz
gzip -d {output.genome}.gz
curl -L -o {output.annotation}.gz https://ftp.ensembl.org/pub/release-{params.release}/gtf/homo_sapiens/Homo_sapiens.GRCh38.110.gtf.gz
curl -L -o {output.annotation}.gz https://ftp.ensembl.org/pub/release-{params.release}/gtf/homo_sapiens/Homo_sapiens.GRCh38.{params.release}.gtf.gz
gzip -d {output.annotation}.gz
curl -L -o {output.peptide}.gz https://ftp.ensembl.org/pub/release-{params.release}/fasta/homo_sapiens/pep/Homo_sapiens.GRCh38.pep.all.fa.gz
gzip -d {output.peptide}.gz
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