Detectability Task (#46)

* Feature/detectability integration hf updates (#45) * First push detectability model * test update notebbok 1 * Update on Notebooks * updated and merged constants * dataset class * detectability models * detectability report * notebook walkthrough detectability * notebook branch install * temp version update * version * fix unintended splitting * updated notebooks * remove detectability test dataset csv file * minor changes * removed unnecessary notebooks * renamed notebooks * final review on detectability notebooks --------- Co-authored-by: naimakg <[email protected]> * version 0.1.4 and README.md updates --------- Co-authored-by: naimakg <[email protected]>
wilhelm-lab · Oct 30, 2024 · 5fa3b4a · 5fa3b4a
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diff --git a/README.md b/README.md
@@ -47,6 +47,9 @@ $ pip install dlomix[wandb]
 - Fragment Ion Intensity Prediction:
     - a multi-output regression problem where the intensity values for fragment ions are predicted given a peptide sequence along with some additional features.
 
+- Peptide Detectability:
+    - a multi-class classification problem where the detectability of a peptide is predicted given the peptide sequence.
+
 
 
 **To-Do**
@@ -59,6 +62,7 @@ Functionality:
 - [X] add residual plots to reporting, possibly other regression analysis tools
 - [X] output reporting results as PDF
 - [X] refactor reporting module to use W&B Report API (Retention Time)
+- [X] add additional detectability task
 - [ ] extend pipeline for different types of models and backbones
 - [ ] extend pipeline to allow for fine-tuning with custom datasets