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Added "guideline", "case report" canonical pub type; preferred PubMed…
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… as source

Scopus is too aggressive about assigning articles to the "article" publication type when they're often reviews. Also, we've heard from users that they would like to see pub types broken out into guideline and case report as well. This is also consistent with how many researchers order their CVs.
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@paulalbert1
paulalbert1 authored Jan 1, 2023
1 parent edf3f48 commit 79ff1f6
Showing 1 changed file with 48 additions and 42 deletions.
90 changes: 48 additions & 42 deletions src/main/java/reciter/algorithm/util/ArticleTranslator.java
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Original file line number Diff line number Diff line change
Expand Up @@ -437,45 +437,8 @@ public static ReCiterArticle translate(PubMedArticle pubmedArticle, ScopusArticl

private static void determinePublicationTypeCanonical(ReCiterArticle reCiterArticle, ScopusArticle scopusArticle) {
String publicationTypeCanonical = null;
if(reCiterArticle.getPublicationTypeScopus() != null && scopusArticle.getSubType() != null) {
if(scopusArticle.getSubType().equalsIgnoreCase("cp")
||
(reCiterArticle.getArticleTitle() != null && reCiterArticle.getArticleTitle().contains("Consensus Development Conference"))
||
(reCiterArticle.getArticleTitle() != null && reCiterArticle.getArticleTitle().contains("Consensus Development Conference, NIH"))
||
(reCiterArticle.getArticleTitle() != null && reCiterArticle.getArticleTitle().contains("Address"))
||
(reCiterArticle.getArticleTitle() != null && reCiterArticle.getArticleTitle().contains("Clinical Conference"))
||
(reCiterArticle.getArticleTitle() != null && reCiterArticle.getArticleTitle().contains("Congress"))
||
(reCiterArticle.getArticleTitle() != null && reCiterArticle.getArticleTitle().contains("Lecture"))) {
publicationTypeCanonical = "Conference Paper";
} else if(scopusArticle.getSubType().equalsIgnoreCase("re")) {
publicationTypeCanonical = "Review";
} else if(scopusArticle.getSubType().equalsIgnoreCase("rp")) {
publicationTypeCanonical = "Report";
} else if(scopusArticle.getSubType().equalsIgnoreCase("ch")) {
publicationTypeCanonical = "Chapter";
} else if(scopusArticle.getSubType().equalsIgnoreCase("ed")) {
publicationTypeCanonical = "Editorial Article";
} else if(scopusArticle.getSubType().equalsIgnoreCase("ip")) {
publicationTypeCanonical = "In Process";
} else if(scopusArticle.getSubType().equalsIgnoreCase("bk")) {
publicationTypeCanonical = "Book";
} else if(scopusArticle.getSubType().equalsIgnoreCase("le")) {
publicationTypeCanonical = "Letter";
} else if(scopusArticle.getSubType().equalsIgnoreCase("no")) {
publicationTypeCanonical = "Comment";
} else if(scopusArticle.getSubType().equalsIgnoreCase("ar")) {
publicationTypeCanonical = "Academic Article";
} else if(scopusArticle.getSubType().equalsIgnoreCase("ab") || scopusArticle.getSubType().equalsIgnoreCase("bz") || scopusArticle.getSubType().equalsIgnoreCase("cr") || scopusArticle.getSubType().equalsIgnoreCase("sh")) {
publicationTypeCanonical = "Article";
}
}

if(publicationTypeCanonical == null && reCiterArticle.getPublicationTypePubmed() != null) {

if(publicationTypeCanonical == null && reCiterArticle.getPublicationTypePubmed() != null) {
if(reCiterArticle.getPublicationTypePubmed().contains("Editorial")) {
publicationTypeCanonical = "Editorial Article";
} else if(reCiterArticle.getPublicationTypePubmed().contains("Letter")) {
Expand All @@ -494,6 +457,10 @@ private static void determinePublicationTypeCanonical(ReCiterArticle reCiterArti
||
reCiterArticle.getPublicationTypePubmed().contains("Lecture")) {
publicationTypeCanonical = "Conference Paper";
} else if(reCiterArticle.getPublicationTypePubmed().contains("Guideline")
||
reCiterArticle.getPublicationTypePubmed().contains("Practice Guideline")) {
publicationTypeCanonical = "Guideline";
} else if(reCiterArticle.getPublicationTypePubmed().contains("Meta-Analysis")
||
reCiterArticle.getPublicationTypePubmed().contains("Review")
Expand All @@ -506,6 +473,8 @@ private static void determinePublicationTypeCanonical(ReCiterArticle reCiterArti
||
reCiterArticle.getPublicationTypePubmed().contains("Practice Guideline")) {
publicationTypeCanonical = "Review";
} else if(reCiterArticle.getPublicationTypePubmed().contains("Case Reports")) {
publicationTypeCanonical = "Case Report";
} else if(reCiterArticle.getPublicationTypePubmed().contains("Journal Article")
||
reCiterArticle.getPublicationTypePubmed().contains("Clinical Trial, Phase I")
Expand All @@ -530,8 +499,6 @@ private static void determinePublicationTypeCanonical(ReCiterArticle reCiterArti
||
reCiterArticle.getPublicationTypePubmed().contains("Pragmatic Clinical Trial")
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reCiterArticle.getPublicationTypePubmed().contains("Case Reports")
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reCiterArticle.getPublicationTypePubmed().contains("Clinical Study")
||
reCiterArticle.getPublicationTypePubmed().contains("Clinical Trial Protocol")
Expand All @@ -543,10 +510,49 @@ private static void determinePublicationTypeCanonical(ReCiterArticle reCiterArti
} else {
publicationTypeCanonical = "Article";
}
}


if(reCiterArticle.getPublicationTypeScopus() != null && scopusArticle.getSubType() != null) {
if(scopusArticle.getSubType().equalsIgnoreCase("cp")
||
(reCiterArticle.getArticleTitle() != null && reCiterArticle.getArticleTitle().contains("Consensus Development Conference"))
||
(reCiterArticle.getArticleTitle() != null && reCiterArticle.getArticleTitle().contains("Consensus Development Conference, NIH"))
||
(reCiterArticle.getArticleTitle() != null && reCiterArticle.getArticleTitle().contains("Address"))
||
(reCiterArticle.getArticleTitle() != null && reCiterArticle.getArticleTitle().contains("Clinical Conference"))
||
(reCiterArticle.getArticleTitle() != null && reCiterArticle.getArticleTitle().contains("Congress"))
||
(reCiterArticle.getArticleTitle() != null && reCiterArticle.getArticleTitle().contains("Lecture"))) {
publicationTypeCanonical = "Conference Paper";
} else if(scopusArticle.getSubType().equalsIgnoreCase("re")) {
publicationTypeCanonical = "Review";
} else if(scopusArticle.getSubType().equalsIgnoreCase("rp")) {
publicationTypeCanonical = "Report";
} else if(scopusArticle.getSubType().equalsIgnoreCase("ch")) {
publicationTypeCanonical = "Chapter";
} else if(scopusArticle.getSubType().equalsIgnoreCase("ed")) {
publicationTypeCanonical = "Editorial Article";
} else if(scopusArticle.getSubType().equalsIgnoreCase("ip")) {
publicationTypeCanonical = "In Process";
} else if(scopusArticle.getSubType().equalsIgnoreCase("bk")) {
publicationTypeCanonical = "Book";
} else if(scopusArticle.getSubType().equalsIgnoreCase("le")) {
publicationTypeCanonical = "Letter";
} else if(scopusArticle.getSubType().equalsIgnoreCase("no")) {
publicationTypeCanonical = "Comment";
} else if(scopusArticle.getSubType().equalsIgnoreCase("ar")) {
publicationTypeCanonical = "Academic Article";
} else if(scopusArticle.getSubType().equalsIgnoreCase("ab") || scopusArticle.getSubType().equalsIgnoreCase("bz") || scopusArticle.getSubType().equalsIgnoreCase("cr") || scopusArticle.getSubType().equalsIgnoreCase("sh")) {
publicationTypeCanonical = "Article";
}
}
reCiterArticle.setPublicationTypeCanonical(publicationTypeCanonical);
}
private static void populateFeatures(ReCiterArticle reCiterArticle, String nameIgnoredCoAuthors) {
List<String> ignoredCoAuthorNames = Arrays.asList(nameIgnoredCoAuthors.trim().split("\\s*,\\s*"));
ReCiterArticleFeatures reCiterArticleFeatures = new ReCiterArticleFeatures();
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