Jekyll build from commit 2a2882b by GitHub Action

vivarium-collective · Nov 16, 2024 · 4bd2600 · 4bd2600
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diff --git a/.nojekyll b/.nojekyll
diff --git a/README.md b/README.md
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+# Vivarium Collective Website
+[https://vivarium-collective.github.io](https://vivarium-collective.github.io)
+
+## Setup
+
+### Install Dependencies
+
+1. Install Ruby and Jekyll following [Jekyll's
+   documentation](https://jekyllrb.com/docs/installation/).
+2. Install dependencies:
+
+   ```console
+   $ bundle
+   Fetching gem metadata from https://rubygems.org/..........
+   Resolving dependencies...
+   Using bundler 2.2.17
+   ```
+
+## Usage
+
+### Compile Static HTML
+
+```console
+bundle exec jekyll build
+```
+
+The static HTML will be placed in `_site`.
+
+### Serve Development Website
+
+```console
+bundle exec jekyll serve
+```
+
+The website will be served at http://localhost:4000. Note that this
+command implicitly runs `jekyll build`.
+
+### Deploy to Production
+
+Note that you shouldn't have to do this in normal usage. GitHub Actions
+has been configured to deploy the latest code in `main` every night at
+midnight and upon every push to `main`.
+
+To deploy the compiled HTML to GitHub Pages, execute:
+
+```console
+./deploy.sh
+```
+
+This will build the website and push the contents of `_site` to the
+`gh-pages` branch of the repository.
diff --git a/assets/card-imgs/COBRApy.png b/assets/card-imgs/COBRApy.png
diff --git a/assets/card-imgs/bioscrape-output.png b/assets/card-imgs/bioscrape-output.png
diff --git a/assets/card-imgs/bioscrape.png b/assets/card-imgs/bioscrape.png
diff --git a/assets/card-imgs/biosimulators.png b/assets/card-imgs/biosimulators.png
diff --git a/assets/card-imgs/convenience_kinetics.png b/assets/card-imgs/convenience_kinetics.png
diff --git a/assets/card-imgs/cytosim.png b/assets/card-imgs/cytosim.png
diff --git a/assets/card-imgs/medyan.png b/assets/card-imgs/medyan.png
diff --git a/assets/card-imgs/readdy.png b/assets/card-imgs/readdy.png
diff --git a/assets/card-imgs/smoldyn_banner.jpg b/assets/card-imgs/smoldyn_banner.jpg
diff --git a/assets/card-imgs/template-repo.png b/assets/card-imgs/template-repo.png
diff --git a/assets/card-imgs/vivarium-avatar.png b/assets/card-imgs/vivarium-avatar.png
diff --git a/assets/card-imgs/vivarium-chemotaxis.png b/assets/card-imgs/vivarium-chemotaxis.png
diff --git a/assets/card-imgs/vivarium-core.png b/assets/card-imgs/vivarium-core.png
diff --git a/assets/card-imgs/vivarium-multibody.png b/assets/card-imgs/vivarium-multibody.png
diff --git a/assets/css/style.css b/assets/css/style.css
diff --git a/deploy.sh b/deploy.sh
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+set -e
+
+BUILD_DIR=_site
+USERNAME="vivarium-collective"
+DEPLOY_BRANCH=gh-pages
+
+if [[ $(git remote -v) == *"@"* ]]; then
+    GITHUBREMOTE="[email protected]:$USERNAME/$USERNAME.github.io.git"
+else
+    GITHUBREMOTE="https://github.com/$USERNAME/$USERNAME.github.io.git"
+fi
+
+# Build Website
+JEKYLL_ENV=production bundle exec jekyll build
+
+# To avoid leaking git history, re-generate each time
+if [ -d "$BUILD_DIR/.git/" ]; then
+    rm -rf "$BUILD_DIR/.git"
+fi
+
+git -C "$BUILD_DIR" init
+git -C "$BUILD_DIR" add -A
+git -C "$BUILD_DIR" commit -m 'deploy'
+src_branch=$(git -C $BUILD_DIR rev-parse --abbrev-ref HEAD)
+git -C "$BUILD_DIR" push -f "$GITHUBREMOTE" $src_branch:$DEPLOY_BRANCH