Issue #1285 default type for survival models #2448
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| # Run CI for R using https://eddelbuettel.github.io/r-ci/ | |
| name: ci | |
| on: | |
| push: | |
| pull_request: | |
| env: | |
| _R_CHECK_FORCE_SUGGESTS_: "false" | |
| _R_CHECK_TESTS_NLINES_: 0 | |
| R_NOT_CRAN: true | |
| R_GH: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_PAT }} | |
| jobs: | |
| ci: | |
| strategy: | |
| matrix: | |
| include: | |
| # - {os: macOS-latest, r: 'release'} | |
| # - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release', depends_only: TRUE} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel'} | |
| - {os: ubuntu-latest, r: '4.1.3'} | |
| - {os: ubuntu-latest, r: '4.0.0'} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| _R_CHECK_FORCE_SUGGESTS_: "false" | |
| _R_CHECK_TESTS_NLINES_: 0 | |
| R_NOT_CRAN: true | |
| R_GH: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_PAT }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Get Script | |
| run: curl -OLs https://eddelbuettel.github.io/r-ci/run.sh && chmod 0755 run.sh | |
| - name: unignore tests | |
| run: awk '!/tinytest/' .Rbuildignore > temp && mv temp .Rbuildignore | |
| - name: cat Rbuildignore | |
| run: cat .Rbuildignore | |
| - name: Bootstrap | |
| run: ./run.sh bootstrap | |
| - name: png (for svglite) | |
| run: sudo apt update -qq && sudo apt install --yes --no-install-recommends libpng-dev | |
| - name: svglite from source | |
| run: Rscript -e "bspm::disable();install.packages('svglite', from = 'source');bspm::enable()" | |
| - name: TMB | |
| run: ./run.sh install_source TMB | |
| - name: glmmTMB source | |
| run: ./run.sh install_source glmmTMB | |
| - name: tinysnapshot dev | |
| run: ./run.sh install_github vincentarelbundock/tinysnapshot | |
| - name: Matrix source | |
| run: ./run.sh install_source Matrix | |
| - name: Dependencies | |
| run: ./run.sh install_all | |
| - name: Test | |
| run: ./run.sh run_tests | |
| # - name: Coverage | |
| # if: ${{ matrix.os == 'ubuntu-latest' }} | |
| # run: ./run.sh coverage |