Set language, remove missing class, and update docs dependency versio…

…ns for 3.12

.readthedocs.yml

@@ -12,6 +12,7 @@ build:
     python: "3.12"
   apt_packages:
     - libjansson-dev
+    - cmake
 
 # Build documentation in the bdsg/docs/ directory with Sphinx
 sphinx:

bdsg/docs/Makefile

@@ -18,12 +18,15 @@ help:
 # So we link it to something predictable.
 # Also make sure the CMake build will run Doxygen for us.
 ../../lib/bdsg.module:
-	cd ../.. && mkdir -p build && cd build && cmake .. -DPYTHON_EXECUTABLE=$(shell which python3) -DRUN_DOXYGEN=ON && $(MAKE)
+	cd ../.. && rm -f lib/bdsg.cpython-*.*
+	cd ../.. && mkdir -p build
+	cd ../../build && cmake .. -DPYTHON_EXECUTABLE=$(shell which python3) -DRUN_DOXYGEN=ON
+	cd ../../build && $(MAKE)
 	cd ../.. && ln lib/bdsg.cpython-*.* lib/bdsg.module
 
 # Make sure we are ready to run Sphinx
 sphinxprep: ../../lib/bdsg.module
-	python3 -c 'import sphinx ; import breathe' || pip3 install -r requirements.txt --use-feature=2020-resolver
+	python3 -c 'import sphinx ; import breathe' || pip install -r requirements.txt
 
 clean:
 	rm -Rf $(BUILDDIR)

bdsg/docs/conf.py

@@ -88,7 +88,7 @@
 #
 # This is also used if you do content translation via gettext catalogs.
 # Usually you set "language" from the command line for these cases.
-language = None
+language = "en"
 
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.
@@ -116,7 +116,7 @@
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
 # so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ['_static']
+html_static_path = []
 
 # Custom sidebar templates, must be a dictionary that maps document names
 # to template names.

bdsg/docs/requirements.txt

@@ -12,7 +12,7 @@ packaging==20.4
 Pygments==2.7.2
 pyparsing==2.4.7
 pytz==2020.1
-requests==2.24.0
+requests==2.32.3
 six==1.15.0
 snowballstemmer==2.0.0
 Sphinx==5.1.1
@@ -24,5 +24,5 @@ sphinxcontrib-jsmath==1.0.1
 sphinxcontrib-qthelp==1.0.3
 sphinxcontrib-serializinghtml==1.1.5
 sphinxcontrib-websupport==1.2.4
-urllib3==1.25.11
+urllib3==2.2.3
 

bdsg/docs/rst/api.rst

@@ -235,9 +235,6 @@ Here is an example of how to use these typed collections:
 .. autoclass:: vector_handlegraph_handle_t
     :members:
 
-.. autoclass:: vector_handlegraph_path_handle_t
-    :members:
-
 .. autoclass:: vector_handlegraph_step_handle_t
     :members: