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@vertesy
vertesy committed Oct 24, 2024
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2 changes: 1 addition & 1 deletion CITATION.cff
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@@ -1,6 +1,6 @@
cff-version: 1.2.0
title: vertesy/ggExpress - the fastest way to create, annotate and and save plots in R.
version: v0.9.0
version: v0.9.5
message: >-
If you use this software, please cite it using these metadata.
type: software
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9 changes: 6 additions & 3 deletions DESCRIPTION
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Package: ggExpress
Title: ggExpress is the fastest way to create, annotate and export plots
in R
Version: 0.9.0
Version: 0.9.5
Authors@R:
person("Abel", "Vertesy", , "[email protected]", role = c("aut", "cre"))
Author: Abel Vertesy <[email protected]> [aut, cre]
Expand Down Expand Up @@ -30,9 +30,12 @@ Imports:
cowplot,
ggVennDiagram,
MarkdownReports,
qs,
RColorBrewer,
tibble
tibble,
tictoc,
tidyr
Encoding: UTF-8
Packaged: 2023-11-27 00:15:29.839722
Packaged: 2024-10-24 15:50:59.849277
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
119 changes: 94 additions & 25 deletions Development/Dependencies.R
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Dependency file generated on Mon Nov 27 00:06:14 2023
Dependency file generated on Thu Oct 24 15:20:01 2024

####################################################################################################
ggExpress.R
####################################################################################################
$`character(0)`
[1] "as_tibble" "ggVennDiagram" "iround" "is.list2" "plot_grid" "save_plot"
$`c("package:Connectome.tools", "package:MarkdownHelpers")`
[1] "unless.specified"

$`c("package:Connectome.tools", "package:Seurat.utils", "package:ggExpress", "package:CodeAndRoll2", "package:dplyr", "package:tidyr", "package:tibble")`
[1] "as_tibble"

$`c("package:dplyr", "package:ggplot2")`
[1] "sym"

$`c("package:MarkdownHelpers", "package:CodeAndRoll2")`
[1] "iround"

$`c("package:MarkdownReports", "package:CodeAndRoll2", "package:stats")`
[1] "median"

$`c("package:ReadWriter", "package:Stringendo")`
[1] "sppp"

$`c("package:Seurat.utils", "package:ggExpress", "package:cowplot")`
[1] "plot_grid" "save_plot"

$`c("package:Seurat.utils", "package:ggExpress", "package:MarkdownHelpers")`
[1] "llogit"

$`c("package:Seurat.utils", "package:ggExpress")`
[1] "qqSave" "qsave"

$`c("package:Seurat.utils", "package:ggplot2")`
[1] "coord_polar" "element_text" "geom_hline" "geom_vline" "labs"
[6] "scale_x_log10" "scale_y_log10" "theme"

$`c("package:Seurat.utils", "package:MarkdownHelpers", "package:Stringendo")`
[1] "percentage_formatter"

$`c("package:Seurat.utils", "package:MarkdownReports", "package:MarkdownHelpers", "package:Stringendo")`
[1] "iprint"

$`c("package:Seurat.utils", "package:Stringendo")`
[1] "kpp"

$`c("package:UVI.tools", "package:ggpubr")`
[1] "ggbarplot"

$`c("package:UVI.tools", "package:Seurat.utils", "package:ggExpress", "package:tictoc")`
[1] "tic" "toc"

$`c("package:UVI.tools", "package:Seurat.utils", "package:tibble")`
[1] "rownames_to_column"

$`c("package:UVI.tools", "package:tidyr")`
[1] "pivot_longer"

$`package:base`
[1] "as.character" "as.data.frame" "as.numeric" "c" "cat" "cbind" "colnames"
[8] "factor" "getwd" "is.matrix" "is.null" "is.numeric" "isFALSE" "length"
[15] "make.unique" "max" "names" "ncol" "paste" "paste0" "print"
[22] "rep" "rev" "round" "signif" "sort" "stopifnot" "substitute"
[29] "sum" "unique" "unlist" "which"
[1] "as.character" "as.data.frame" "as.factor" "as.numeric" "c"
[6] "cat" "cbind" "colnames" "factor" "getwd"
[11] "is.character" "is.data.frame" "is.logical" "is.matrix" "is.null"
[16] "is.numeric" "isFALSE" "length" "make.names" "make.unique"
[21] "max" "message" "names" "ncol" "nrow"
[26] "paste" "paste0" "print" "rep" "rev"
[31] "round" "sapply" "signif" "sort" "stop"
[36] "stopifnot" "substitute" "sum" "unique" "unlist"
[41] "which"

$`package:CodeAndRoll2`
[1] "is.list2"

$`package:ggExpress`
[1] "qMarkdownImageLink" "qqqAxisLength" "qqqList.2.DF.ggplot" "qqqNamed.Vec.2.Tbl" "qqSave"
[1] ".assertMaxCategories" "ggVennDiagram" "qMarkdownImageLink" "qqqAxisLength"
[5] "qqqList.2.DF.ggplot" "qqqNamed.Vec.2.Tbl"

$`package:ggplot2`
[1] "annotation_logticks" "coord_polar" "element_rect" "element_text" "geom_abline"
[6] "geom_density_2d" "geom_hline" "geom_vline" "guides" "labs"
[11] "scale_fill_gradient" "scale_x_log10" "scale_y_log10" "theme"
[1] "annotation_logticks" "element_rect" "expansion" "geom_abline"
[5] "geom_density_2d" "guide_legend" "guides" "position_fill"
[9] "position_stack" "scale_fill_gradient" "scale_x_continuous" "ylab"

$`package:ggpubr`
[1] "ggbarplot" "ggboxplot" "ggdensity" "gghistogram" "ggpar"
[6] "ggpie" "ggscatter" "ggstripchart" "ggviolin" "grids"
[11] "stat_compare_means" "stat_cor"
[1] "ggboxplot" "ggdensity" "gghistogram" "ggpar"
[5] "ggpie" "ggscatter" "ggstripchart" "ggviolin"
[9] "grids" "stat_compare_means" "stat_cor"

$`package:MarkdownHelpers`
[1] "llogit" "stopif" "unless.specified" "ww.FnP_parser"
[5] "ww.set.file.extension" "ww.ttl_field"

$`package:stats`
[1] "median"
[1] "ww.FnP_parser" "ww.set.file.extension" "ww.ttl_field"

$`package:Stringendo`
[1] "FixPlotName" "flag.nameiftrue" "iprint" "percentage_formatter"
[5] "sppp"
[1] "FixPlotName" "flag.nameiftrue" "parseParamStringWNames"
[4] "stopif"

$`package:utils`
[1] "stack"
[1] "head" "stack"

character(0)
c("Connectome.tools", "MarkdownHelpers")
c("Connectome.tools", "Seurat.utils", "ggExpress", "CodeAndRoll2", "dplyr", "tidyr", "tibble")
c("dplyr", "ggplot2")
c("MarkdownHelpers", "CodeAndRoll2")
c("MarkdownReports", "CodeAndRoll2", "stats")
c("ReadWriter", "Stringendo")
c("Seurat.utils", "ggExpress", "cowplot")
c("Seurat.utils", "ggExpress", "MarkdownHelpers")
c("Seurat.utils", "ggExpress")
c("Seurat.utils", "ggplot2")
c("Seurat.utils", "MarkdownHelpers", "Stringendo")
c("Seurat.utils", "MarkdownReports", "MarkdownHelpers", "Stringendo")
c("Seurat.utils", "Stringendo")
c("UVI.tools", "ggpubr")
c("UVI.tools", "Seurat.utils", "ggExpress", "tictoc")
c("UVI.tools", "Seurat.utils", "tibble")
c("UVI.tools", "tidyr")
base
CodeAndRoll2
ggExpress
ggplot2
ggpubr
MarkdownHelpers
stats
Stringendo
utils
6 changes: 4 additions & 2 deletions Development/config.R
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@@ -1,7 +1,9 @@
# Configuration for the Package
# file.edit("~/GitHub/Packages/ggExpress/Development/config.R")

DESCRIPTION <- list(
package.name = "ggExpress",
version = "0.9.0",
version = "0.9.5",
title = "ggExpress is the fastest way to create, annotate and export plots in R",
description = "ggExpress is a set of R functions that allows you to generate precise figures easily,
and create clean markdown reports about what you just discovered with your analysis script. It is ggplot-based smaller brother of vertesy/MarkdownReports. It helps you to:
Expand All @@ -12,7 +14,7 @@ DESCRIPTION <- list(
5. Share your report, by exporting your report to .pdf, .html or .docx, or via Github or a personal website.",

depends = "Stringendo, MarkdownHelpers, ggplot2, ggpubr",
imports = "cowplot, tibble, RColorBrewer, MarkdownReports, CodeAndRoll2, ggVennDiagram",
imports = "cowplot, tibble, tidyr, RColorBrewer, MarkdownReports, CodeAndRoll2, ggVennDiagram, qs, tictoc",

author.given = "Abel",
author.family = "Vertesy",
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1 change: 1 addition & 0 deletions NAMESPACE
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Expand Up @@ -17,6 +17,7 @@ export(qscatter)
export(qstripchart)
export(qvenn)
export(qviolin)
importFrom(CodeAndRoll2,is.list2)
importFrom(MarkdownHelpers,llogit)
importFrom(cowplot,plot_grid)
importFrom(cowplot,save_plot)
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