Missing import declaration for job

on #64

CITATION.cff

@@ -1,6 +1,6 @@
 cff-version: 1.2.0
 title: vertesy/Seurat.utils
-version: v2.0.7
+version: v2.0.8
 message: >-
   If you use this software, please cite it using these metadata.
 type: software

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: Seurat.utils
 Title: Seurat.utils - utility functions for Seurat
-Version: 2.0.7
+Version: 2.0.8
 Authors@R: 
     person("Abel", "Vertesy", , "[email protected]", role = c("aut", "cre"))
 Author: Abel Vertesy <[email protected]> [aut, cre]
@@ -18,7 +18,6 @@ Depends:
     Seurat,
     Stringendo
 Imports: 
-    base,
     cowplot,
     dplyr,
     ggcorrplot,
@@ -28,11 +27,11 @@ Imports:
     grDevices,
     HGNChelper,
     htmlwidgets,
+    job,
     MarkdownHelpers,
     MarkdownReports,
     Matrix,
     matrixStats,
-    methods,
     pheatmap,
     princurve,
     R.utils,
@@ -43,17 +42,15 @@ Imports:
     Seurat,
     SoupX,
     sparseMatrixStats,
-    stats,
     stringr,
     tibble,
     tictoc,
-    utils,
     vroom
 Suggests: 
     EnhancedVolcano,
     princurve,
     SoupX
 Encoding: UTF-8
-Packaged: 2023-11-16 15:17:11.829403
+Packaged: 2023-11-24 00:16:34.118168
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.2.3

Development/Create_the_Seurat.utils_Package.R

@@ -20,7 +20,7 @@ try(dev.off(), silent = TRUE)
 
 # Setup ------------------------
 package.name <- 	"Seurat.utils"
-package.version <- "2.0.7"
+package.version <- "2.0.8"
 setwd("~/GitHub/Packages/")
 
 RepositoryDir <- paste0("~/GitHub/Packages/", package.name, "/")
@@ -41,9 +41,10 @@ DESCRIPTION <- list("Title" = "Seurat.utils - utility functions for Seurat"
                     , "Packaged" =  Sys.time()
                     # , "Repository" =  "CRAN"
                     , "Depends" =  "ggplot2, Seurat, Stringendo, CodeAndRoll2, ggExpress"
-                    , "Imports" = "base, cowplot, dplyr, ggcorrplot, ggpubr, ggrepel, graphics, grDevices, HGNChelper,
-                          htmlwidgets, MarkdownHelpers, MarkdownReports, Matrix, matrixStats, methods, princurve, ReadWriter, pheatmap,
-                          R.utils, readr, reshape2, scales, Seurat, SoupX, sparseMatrixStats, stats, stringr, tibble, tictoc, utils, vroom"
+                    , "Imports" = "cowplot, dplyr, ggcorrplot, ggpubr, ggrepel, graphics, grDevices, HGNChelper,
+                          htmlwidgets, MarkdownHelpers, MarkdownReports, Matrix, matrixStats, princurve, ReadWriter, pheatmap,
+                          R.utils, readr, reshape2, scales, Seurat, SoupX, sparseMatrixStats, stringr, tibble, tictoc,
+                          vroom, job"
                     , "Suggests" = "SoupX, princurve, EnhancedVolcano"
                     , "BugReports"= "https://github.com/vertesy/Seurat.utils/issues"
 )

Development/Development.bac

@@ -5283,7 +5283,6 @@ xsave <- function(obj, prefix = NULL
 
   if (background.job & rstudioapi::isAvailable()) {
     "This part is not debugged yet!"
-    "This part is not debugged yet!"
 
     message("Started saving as background job.")
     job::job({
@@ -5313,6 +5312,7 @@ xsave <- function(obj, prefix = NULL
 #' @seealso \code{\link[qs]{qread}} for the underlying read function used.
 #' @importFrom qs qread
 #' @importFrom tictoc tic toc
+#' @importFrom job job
 xread <- function(file, nthreads = 4, ...) {
   try(tictoc::tic(), silent = TRUE)
 

R/Seurat.Utils.R

@@ -5283,7 +5283,6 @@ xsave <- function(obj, prefix = NULL
 
   if (background.job & rstudioapi::isAvailable()) {
     "This part is not debugged yet!"
-    "This part is not debugged yet!"
 
     message("Started saving as background job.")
     job::job({
@@ -5313,6 +5312,7 @@ xsave <- function(obj, prefix = NULL
 #' @seealso \code{\link[qs]{qread}} for the underlying read function used.
 #' @importFrom qs qread
 #' @importFrom tictoc tic toc
+#' @importFrom job job
 xread <- function(file, nthreads = 4, ...) {
   try(tictoc::tic(), silent = TRUE)