MarkdownReportsDev is new discontinued.

Further development will be implemented here, in MarkdownReports. MarkdownReportsDev was made when big changes were happening. The development reached its main goals.

DESCRIPTION

@@ -1,22 +1,22 @@
 Package: MarkdownReports
 Title: Generate Scientific Figures and Reports Easily
-Version: 4.1.0
+Version: 4.3.2
 Authors@R: 
     person(given = "Abel",
            family = "Vertesy",
            role = c("aut", "cre"),
            email = "[email protected]")
 Author: Abel Vertesy <[email protected]> [aut, cre]
-Description: MarkdownReports is a set of R functions that allows
-    you to generate precise figures easily, and create clean markdown
-    reports about what you just discovered with your analysis script. It
-    helps you to: 1. Create scientifically accurate (annotated) figures
-    with very short code, making use of variable-, row- and columnnames.
-    2. Save figures automatically as vector graphic (.pdf), that you can
-    use from presentation to posters anywhere.  3. Incorporate your
-    figures automatically in a markdown report file.  4. Describe your
-    figures & findings in the same report in a clear and nicely formatted
-    way, parsed from your variables into english sentences.  5. Share your
+Description: MarkdownReports is a set of R functions that allows you to
+    generate precise figures easily, and create clean markdown reports
+    about what you just discovered with your analysis script. It helps you
+    to: 1. Create scientifically accurate (annotated) figures with very
+    short code, making use of variable-, row- and columnnames.  2. Save
+    figures automatically as vector graphic (.pdf), that you can use from
+    presentation to posters anywhere.  3. Incorporate your figures
+    automatically in a markdown report file.  4. Describe your figures &
+    findings in the same report in a clear and nicely formatted way,
+    parsed from your variables into english sentences.  5. Share your
     report, by exporting your report to .pdf, .html or .docx, or via
     Github or a personal website.
 License: GPL-3 + file LICENSE
@@ -36,7 +36,7 @@ Imports:
     vioplot
 Encoding: UTF-8
 LazyData: true
-Packaged: 2020-12-16 11:20:44
+Packaged: 2021-10-31 15:03:27
 Repository: CRAN
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.1.1

Development/Create_the_MarkdownReports_Package.v4.3.2.R

@@ -0,0 +1,120 @@
+######################################################################################################
+# Workflow_to_Create_an_R_Package.R
+# 3- Oct 2021
+######################################################################################################
+# source("~/GitHub/Packages/MarkdownReports/Development/Create_the_MarkdownReports_Package.v4.3.2.R")
+rm(list = ls(all.names = TRUE));
+try(dev.off(), silent = TRUE)
+
+# install.packages("devtools")
+# Functions ------------------------
+# devtools::install_github(repo = "vertesy/MarkdownReports/MarkdownReports")
+try (source('~/GitHub/Packages/CodeAndRoll/CodeAndRoll.R'),silent= FALSE)
+
+# irequire("devtools")
+# install_version("devtools", version = "2.0.2", repos = "http://cran.at.r-project.org")
+irequire("devtools")
+irequire("roxygen2")
+irequire("stringr")
+
+kollapse <-function(..., print = TRUE) {
+if (print == TRUE) {
+    print(paste0(c(...), collapse = ""))
+  }
+  paste0(c(...), collapse = "")
+}
+
+# Setup ------------------------
+PackageName = 	"MarkdownReports"
+setwd("~/GitHub/")
+
+RepositoryDir = kollapse("~/GitHub/Packages/", PackageName, "/")
+fname = 	kollapse(PackageName, ".R")
+Package_FnP = 	kollapse(RepositoryDir, "R/", fname)
+
+BackupDir = "~/GitHub/Packages/MarkdownReports/Development/"
+dir.create(BackupDir)
+
+# devtools::use_package("vioplot")
+DESCRIPTION <- list("Title" = "Generate Scientific Figures and Reports Easily"
+    , "Author" = person(given = "Abel", family = "Vertesy", email = "[email protected]", role =  c("aut", "cre") )
+    , "Authors@R" = 'person(given = "Abel", family = "Vertesy", email = "[email protected]", role =  c("aut", "cre") )'
+    , "Description" = "MarkdownReports is a set of R functions that allows you to generate precise figures easily,
+    and create clean markdown reports about what you just discovered with your analysis script. It helps you to:
+    1. Create scientifically accurate (annotated) figures with very short code, making use of variable-, row- and columnnames.
+    2. Save figures automatically as vector graphic (.pdf), that you can use from presentation to posters anywhere.
+    3. Incorporate your figures automatically in a markdown report file.
+    4. Describe your figures & findings in the same report in a clear and nicely formatted way, parsed from your variables into english sentences.
+    5. Share your report, by exporting your report to .pdf, .html or .docx, or via Github or a personal website."
+    , "License" = "GPL-3 + file LICENSE"
+    , "Version" = "4.3.2"
+    , "Packaged" =  Sys.time()
+    , "Repository" =  "CRAN"
+    , "Imports" = "stats, methods, sm, graphics, grDevices, gplots, RColorBrewer, colorRamps, clipr, vioplot, VennDiagram, sessioninfo"
+    # , "Suggests" = ""
+    , "BugReports"= "https://github.com/vertesy/MarkdownReports/issues"
+)
+
+
+setwd(RepositoryDir)
+if ( !dir.exists(RepositoryDir) ) { create(path = RepositoryDir, description = DESCRIPTION, rstudio = TRUE)
+} else {
+    getwd()
+    try(file.remove(c("DESCRIPTION","NAMESPACE", "MarkdownReports.Rproj")))
+    create_package(path = RepositoryDir, fields = DESCRIPTION, open = F)
+}
+
+
+# go and write fun's ------------------------------------------------------------------------
+# file.edit(Package_FnP)
+
+# Create Roxygen Skeletons ------------------------
+# RoxygenReady(Package_FnP)
+
+# replace output files ------------------------------------------------
+BackupOldFile = 	kollapse(BackupDir, "Development", ".bac", print = FALSE)
+AnnotatedFile = 	kollapse(BackupDir, "Development", ".annot.R", print = FALSE)
+file.copy(from = Package_FnP, to = BackupOldFile, overwrite = TRUE)
+# file.copy(from = AnnotatedFile, to = Package_FnP, overwrite = TRUE)
+
+# Manual editing of descriptors ------------------------------------------------
+# file.edit(Package_FnP)
+
+# Compile a package ------------------------------------------------
+setwd(RepositoryDir)
+getwd()
+document()
+
+
+# Install your package ------------------------------------------------
+# # setwd(RepositoryDir)
+install(RepositoryDir)
+# require("MarkdownReports")
+# # remove.packages("MarkdownReports")
+# # Test your package ------------------------------------------------
+# help("wplot")
+# cat("\014")
+# devtools::run_examples()
+
+
+# Test if you can install from github ------------------------------------------------
+# devtools::install_github(repo = "vertesy/MarkdownReports")
+# devtools::install_github(repo = "vertesy/MarkdownReports/MarkdownReports")
+# require("MarkdownReports")
+
+# Clean up if not needed anymore ------------------------------------------------
+# View(installed.packages())
+# remove.packages("MarkdownReports")
+
+check(RepositoryDir, cran = TRUE)
+# as.package(RepositoryDir)
+#
+#
+# # source("https://install-github.me/r-lib/desc")
+# # library(desc)
+# # desc$set("MarkdownReports", "foo")
+# # desc$get(MarkdownReports)
+#
+#
+# system("cd ~/GitHub/MarkdownReports/; ls -a; open .Rbuildignore")
+#