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| name: Convert CSV files to Darwin Core compliant event and occurrence files | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| jobs: | |
| generate-data: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: 'renv' | |
| - uses: r-lib/actions/setup-renv@v2 | |
| - uses: actions/cache@v3 # Cache packages so won't be compiled everytime job is run | |
| with: | |
| path: ~/.local/share/renv | |
| key: ${{ runner.os }}-renv-${{ hashFiles('**/renv.lock') }} | |
| restore-keys: | | |
| ${{ runner.os }}-renv- | |
| - name: Cache packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.local/share/renv | |
| key: ${{ runner.os }}-renv-${{ hashFiles('**/renv.lock') }} | |
| restore-keys: | | |
| ${{ runner.os }}-renv- | |
| - name: Restore packages | |
| shell: Rscript {0} | |
| run: | | |
| if (!requireNamespace("renv", quietly = TRUE)) install.packages("renv") | |
| renv::restore() | |
| - name: Generate data # Run the script | |
| run: source("R/data_to_dwc.R") | |
| shell: Rscript {0} | |
| - name: Commit files # Commit changes | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Actions" | |
| git add . | |
| git diff-index --quiet HEAD || (git commit -m "update data" && git push) |