3.3.2

• fix an issue with the api "try it" feature

3.3.1

• Fix an issue with incompatible js code

3.3

• Completely rewrite the metaproteome analysis
• Restructure all javascript code
• Update to rails 5.1
• Fix an issue with the copy to clipboard button
• Fix an crash when searching for an empty query

3.2

• Update the publications section and about page
• Retire the position attribute for peptide
• Improve the performance of downloading proteome data
• Add a configure script for the makefile
• Add ec number and go term information to the database
• Make the make file and scripts more error resilient
• Fix an issue where not all type strains were added to the proteomes
• Fix an issue where the unique peptide finder could crash when requesting 0 sequences
• Update to rails 5.0 and Ruby 2.4
• Update UniProt to 2017.05

3.1.4

Update UniProt to 2016.10

3.1.3

• Update to UniProt 2016.05
• Add protein download to Unique Peptide Finder

3.1.2

• Update to UniProt 2016.2

3.1.1

• Peptidome similarity calculation is now up to 30 times faster
• Add bioinformatics application note to publications
• Fix "Download Data" button of the unique peptide finder
• Fix failing Travis tests
• Update to UniProt 2016.1

3.1

• Switch to UniProt proteomes as data source for the peptidome analysis
• Loading proteomes is now 3-5 times faster
• Calculating the unique peptidome is now 5-25 times faster
• Downloading sequences from the unique peptide finder is now 3-5 times faster
• Don't abbreviate virus names in the peptidome analysis
• Mark type strains and reference proteomes in the proteome selector
• Use better default settings in the makefile to build the database
• Better invalidation rules for viruses
• Fix a bug where the API could return an error 500 in an obscure case
• Fix a bug where the invalid input would result in an error 500 when converting peptides
• Fix a bug where the TPA would crash for non-ascii input
• Update ruby on rails to 4.2.5

3.0.4

• Fix an issue where searching for a combined peptide in the TPA might cause a crash