6.1.1

This is a hotfix release of the Unipept Web application that provides a first set of fixes for using Unipept in combination with the Safari browser.

Bug fixes:

• Unipept crashes when trying to analyse any metaproteomics sample

Known issues:

• Exporting CSV or TSV files containing Unipept's results does not work in Safari. This will be solved in the next Unipept release.

6.1.0

This is a major new release for Unipept, including some very exciting new features. Version 6.1.0 introduces a web-based version of the Peptonizer2000. The Peptonizer2000 aims to bring confidence to the world of metaproteomics (see this publication for a detailed explanation) and has now been directly integrated into Unipept.

Instead of peptide lists, Unipept now also supports uploading CSV, TSV or PSMS-files (or any column-based file), using our new file upload wizard. Using this wizard, it's possible to extract specific columns (i.e. peptides or scores) from an input file and use them in your analyses.

We've also completely reworked the UI of the metaproteomics analysis page. In close resemblance to the Unipept Desktop application, Unipept now also supports projects on the web.

Screenshots:

New features / enhancements:

• Peptonizer 2000: Direct integration of the Peptonizer 2000 pipeline into the Unipept Web application. You no longer need to download and setup a Python workflow to start peptonizing your samples! (#1574)
• File upload wizard: Drag and drop any kind of column-based file into Unipept and conveniently select which columns should be processed. (#1574)
• Sample explorer: Samples can be organized into groups and are always shown in a clear file explorer on the left side of the "metaproteomics analysis" page. (#1574)

Minor changes and bug fixes:

• Added a link to the Unipept Tutorial on the publications page (#1573)
• Added SIHUMI dataset as sample inputs
• Implemented feature to upload file as peptide list (#1560)
• Fixed a lot of minor issues with the exports of data from Unipept (#1571)
• Fixed the "equate I and L" option was always checked (#1567)

6.0.1

This version is a small maintenance release for the Unipept Web Application.

Changes / Enhancements:

• Updated the "about us" page.
• Updated the "publications" page
• Updated the publications referenced from the footer of the web application.

6.0.0

Version 6.0.0 of the Unipept Web application contains some changes to the processing pipeline that allows it to better handle semi-tryptic and non-tryptic peptides, as well as peptides that contain missed cleavages.

5.1.5

This release provides a hotfix for two issues that started to pop up because of incompatibilities between the new Unipept index and the Unipept Web Application.

Bugs:

• Peptides were wrongly in-silico tryptically digested before being sent to the Unipept API for analysis (#1570)
• The "missed cleavage handling" tooltip was sometimes wrongly hidden too soon (#1570)

5.1.4

This release prepares the Unipept Web Application for the switch to using a suffix array in the backend.

Features / enhancements:

• Advanced missed cleavage handling is now always enabled! (#1569)

5.1.3

Release 5.1.3 of the Unipept Web application is a maintenance release that improves the documentation on the website.

Enhancements:

• Add Unipept Desktop 2.0 publication to the list of publications (#1564)

Bug fixes:

• Update link to increase Docker space on Windows tutorial (#1551)

5.1.2

Release 5.1.2 of the Unipept Web application fixes some textual inconsistencies that were present in the application.

Bug fixes:

• Renamed "test" to "Feature type" in the heatmap wizard (unipept/unipept-web-components#226)
• Capitalise "pride" in the dataset creation card (#1562)
• Rename "Equate I and L?" to "Equate I and L" (#1562)

5.1.1

This release of the Unipept Web application fixes a few bugs and inconsistenties that are the result from the big dependency upgrade that we performed for v5.1 of Unipept.

Bug fixes:

• Fixed the styling and inner workings of the multi dataset heatmap (#1559)
• Fixed clicking on an app in the navigation bar did not reset the current app (#1559, #1557)
• Set a maximum width for the content of the pages (#1559)
• Fixed wrong GitHub repositories where used for news pages (#1559)
• Fixed styling of the cog icon on the EC-numbers and InterPro-entries summary pages (#1559)
• Updated parsing of changelogs for product releases such that it works with MarkDown (#1559)
• Fixed styling of links in peptide summary of TPA tool (#1559)
• Fixed inter-assay heatmap in MPA tool (#1558)

5.1.0

This release of the Unipept Web application does not introduce any major new features, but comprises a complete update of the underlying codebase to Vue 3 and Vuetify 3 (coming from Vue and Vuetify 2), making Unipept resilient for the future again.

New features/enhancements:

• Upgrade Vue 2 to Vue 3
• Upgrade Vuetify 3 to Vuetify 3
• Improved error handling. If a network failure occurs, an error is now properly displayed explaining what went wrong.

Bug fixes:

• Fixed a bug that caused the single tryptic peptide analysis to not properly take into account the equate_il setting.