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datashare: remove problematic json input string prior to parsing #25

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merged 4 commits into from
Oct 18, 2024

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pdiakumis
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Fixes #24. Here we simply remove the problematic string prior to jsonlite::fromJSONising (which happens inside rportal::meta_wts_tumor_only).

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Closing, issue has been resolved in the backend.

@pdiakumis pdiakumis closed this Oct 18, 2024
@pdiakumis pdiakumis reopened this Oct 18, 2024
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D'oh. Forgot that this also adds functionality for data sharing of non-automated workflows from the Portal DB. Merging after cleaning out hack.

@pdiakumis pdiakumis merged commit 42af0ed into main Oct 18, 2024
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@pdiakumis pdiakumis deleted the datashare_atlas branch October 18, 2024 06:48
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Datasharing: lexical error: invalid char in json text.
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