Updated bcl_convert unit test case for 10X adapter setting

umccr · Apr 20, 2022 · 64aeca9 · 64aeca9
1 parent 7d0310d
commit 64aeca9
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/data_processors/pipeline/lambdas/bcl_convert.py b/data_processors/pipeline/lambdas/bcl_convert.py
@@ -174,7 +174,7 @@ def get_settings_by_instrument_type_assay(instrument, sample_type, assay):
                 "minimum_trimmed_read_length": 8,
                 "mask_short_reads": 8,
                 # Remove adapters as suggested here:
-                # https://protect-au.mimecast.com/s/mNQhCBNZkph7mW5y3izNXin?domain=kb.10xgenomics.com
+                # https://kb.10xgenomics.com/hc/en-us/articles/4424193781517-What-adapters-should-I-use-in-my-IEM-sample-sheet-
                 "adapter_read_1": "",
                 "adapter_read_2": ""
             }

diff --git a/data_processors/pipeline/lambdas/tests/test_bcl_convert.py b/data_processors/pipeline/lambdas/tests/test_bcl_convert.py
@@ -344,7 +344,7 @@ def test_get_settings_by_instrument_type_assay_10X(self):
         logger.info("-" * 32)
         logger.info(settings)
 
-        self.assertEqual(len(settings), 4)
+        self.assertEqual(len(settings), 6)
         self.assertEqual(settings['minimum_adapter_overlap'], 3)
         self.assertEqual(settings['minimum_trimmed_read_length'], 8)
         self.assertEqual(settings['mask_short_reads'], 8)