Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update README.md #1

Open
wants to merge 1 commit into
base: main
Choose a base branch
from
Open

Update README.md #1

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
28 changes: 14 additions & 14 deletions README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,20 +12,20 @@

## *Methods*

- [Deep generative modeling for single-cell transcriptomics](https://doi.org/10.1038/s41592-018-0229-2)(Nov/2018)
- [Jointly defining cell types from multiple single-cell datasets using LIGER](https://doi.org/10.1038/s41596-020-0391-8)(June/2019)
- [scAlign: a tool for alignment, integration, and rare cell identification from scRNA-seq data](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1766-4)(Aug/2019)
- [Fast, sensitive and accurate integration of single-cell data with Harmony](https://www.nature.com/articles/s41592-019-0619-0#Abs1)(Nov/2019)
- [BBKNN: fast batch alignment of single cell transcriptomes](https://academic.oup.com/bioinformatics/article/36/3/964/5545955)(Feb/2021)
- [Joint probabilistic modeling of single-cell multi-omic data with totalVI](https://doi.org/10.1038/s41592-020-01050-x)(Feb/2021)
- [scMM: Mixture-of-experts multimodal deep generative model for single-cell multiomics data analysis](https://doi.org/10.1101/2021.02.18.431907)(Mar/2021)
- [BABEL enables cross-modality translation between multiomic profiles at single-cell resolution](https://www.pnas.org/content/118/15/e2023070118)(April/2021)
- [Iterative single-cell multi-omic integration using online learning](https://doi.org/10.1038/s41587-021-00867-x)(Apr/2021)
- [Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces](https://doi.org/10.1038/s41467-021-22851-4)(May/2021)
- [Schema: metric learning enables interpretable synthesis of heterogeneous single-cell modalities](https://doi.org/10.1186/s13059-021-02313-2)(May/2021)
- [Integrated analysis of multimodal single-cell data](https://www.cell.com/cell/fulltext/S0092-8674(21)00583-3?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867421005833%3Fshowall%3Dtrue#secsectitle0080)(May/2021)
- [Cobolt: Joint analysis of multimodal single-cell sequencing data](https://doi.org/10.1101/2021.04.03.438329)(Jul/2021)
- [ACE: Explaining cluster from an adversarial perspective](https://doi.org/10.1101/2021.02.08.428881)(Jul/2021)
- [Deep generative modeling for single-cell transcriptomics](https://doi.org/10.1038/s41592-018-0229-2) (Nov/2018)
- [Jointly defining cell types from multiple single-cell datasets using LIGER](https://doi.org/10.1038/s41596-020-0391-8) (June/2019)
- [scAlign: a tool for alignment, integration, and rare cell identification from scRNA-seq data](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1766-4) (Aug/2019)
- [Fast, sensitive and accurate integration of single-cell data with Harmony](https://www.nature.com/articles/s41592-019-0619-0#Abs1) (Nov/2019)
- [BBKNN: fast batch alignment of single cell transcriptomes](https://academic.oup.com/bioinformatics/article/36/3/964/5545955) (Feb/2021)
- [Joint probabilistic modeling of single-cell multi-omic data with totalVI](https://doi.org/10.1038/s41592-020-01050-x) (Feb/2021)
- [scMM: Mixture-of-experts multimodal deep generative model for single-cell multiomics data analysis](https://doi.org/10.1101/2021.02.18.431907) (Mar/2021)
- [BABEL enables cross-modality translation between multiomic profiles at single-cell resolution](https://www.pnas.org/content/118/15/e2023070118) (April/2021)
- [Iterative single-cell multi-omic integration using online learning](https://doi.org/10.1038/s41587-021-00867-x) (Apr/2021)
- [Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces](https://doi.org/10.1038/s41467-021-22851-4) (May/2021)
- [Schema: metric learning enables interpretable synthesis of heterogeneous single-cell modalities](https://doi.org/10.1186/s13059-021-02313-2) (May/2021)
- [Integrated analysis of multimodal single-cell data](https://www.cell.com/cell/fulltext/S0092-8674(21)00583-3?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867421005833%3Fshowall%3Dtrue#secsectitle0080) (May/2021)
- [Cobolt: Joint analysis of multimodal single-cell sequencing data](https://doi.org/10.1101/2021.04.03.438329) (Jul/2021)
- [ACE: Explaining cluster from an adversarial perspective](https://doi.org/10.1101/2021.02.08.428881) (Jul/2021)
- [From Clustering to Cluster Explanations via Neural Networks](https://arxiv.org/pdf/1906.07633.pdf)
- ENVI paper(keep focused)

Expand Down