Merge pull request #101 from uc-cdis/fix/update_beam

Fix Google dataflow install error

requirements.txt

@@ -1,12 +1,12 @@
-python_dateutil==2.8.0
-requests>=2.20.0<3.0.0
-boto3>=1.9.111
+python_dateutil==2.8.2
+requests>=2.26.0<3.0.0
+boto3==1.20.24
 retry==0.9.2
 google-cloud==0.34.0
-google-resumable-media==0.3.1
-google-cloud-storage==1.6.0
-setuptools==40.3.0
-apache-beam[gcp]==2.16.0
+google-resumable-media==2.1.0
+google-cloud-storage==1.43.0
+apache-beam[gcp]==2.34.0
+setuptools==59.6.0
 -e git+https://[email protected]/uc-cdis/[email protected]#egg=cdislogging
 # For the Google script, indexclient source must also be available as a zip
 # file and fed to the script using option "--extra_package" (until package is

scripts/requirements.txt

@@ -1,7 +1,7 @@
-requests==2.20.0
+requests==2.26.0
 retry==0.9.2
-google-auth==1.4.1
-google-resumable-media==0.3.1
-google-cloud-storage==1.10.0
+google-auth==2.3.3
+google-resumable-media==2.1.0
+google-cloud-storage==1.43.0
 -e git+https://[email protected]/uc-cdis/[email protected]#egg=cdislogging
 -e git+https://[email protected]/uc-cdis/[email protected]#egg=cdiserrors

setup.py

@@ -4,14 +4,14 @@
 import setuptools
 
 REQUIRED_PACKAGES = [
-    "python_dateutil==2.8.0",
-    "requests>=2.18.0<3.0.0",
-    "boto3>=1.9.111",
+    "python_dateutil==2.8.2",
+    "requests>=2.26.0<3.0.0",
+    "boto3==1.20.24",
     "google-cloud==0.34.0",
-    "google-resumable-media==0.3.1",
-    "google-cloud-storage==1.6.0",
-    "apache-beam[gcp]==2.16.0",
-    "setuptools==40.3.0",
+    "google-resumable-media==2.1.0",
+    "google-cloud-storage==1.43.0",
+    "apache-beam[gcp]==2.34.0",
+    "setuptools==59.6.0",
 ]
 
 PACKAGE_NAME = "scripts"