#

resistome

Here are 10 public repositories matching this topic...

tseemann / nullarbor

💾 📃 "Reads to report" for public health and clinical microbiology

public-health report variant-calling bacteria fastq phylogenomics denovo-assembly genotyping resistome virulome

Updated Mar 19, 2024
Perl

will-rowe / groot

A resistome profiler for Graphing Resistance Out Of meTagenomes

metagenomics lsh alignment minhash antibiotic-resistance resistome

Updated May 11, 2020
Go

rMAP

GunzIvan28 / rMAP

Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics using WGS

bacteria wgs illumina phylogenomics resistome eskape mobilome

Updated Mar 7, 2024
Shell

WGCA

icaromsc / WGCA

JAMIRA is a reproducible Workflow for Integrative Exploration of Genomic Features of prokariotes

snakemake comparative-genomics genomic-data-analysis genomic-islands resistome virulence-genes bioinformatics-workflow prophages

Updated Nov 10, 2020
Python

will-rowe / drax

A pipeline for Detecting Resistome Associated taXa

metagenomics resistome

Updated Jun 11, 2018
Groovy

lizramirezcar / multi-genome

Mapping, snps calling, phylogeny

bioinformatics snps ngs phylogenetic-trees resistome bacterial-genomes

Updated Oct 2, 2019
Shell

sauravbsaha / uCAREChemSuiteCLI

Predicts bacterial resistome

cran resistance drug bacteria r-package predictor cran-r resistome escherichia coli gram-negative

Updated Jun 11, 2019
R

ralsallaq / metaGx_make

A number of pipelines that are managed by Gnu Make for conducting various analyses on high-throughput NGS

resistome gene-discovery assembly-based read-based

Updated Aug 12, 2020
Shell

yuqing-feng / script_for_meta

Repo for scripts/codes applied in my studies

rna-seq metagenomics amplicon-sequencing resistome

Updated Mar 30, 2023

amr-2024-team-lahti

NCBI-Codeathons / amr-2024-team-lahti

This repository contains tools and resources developed by Team Lahti during the "Resistance is Futile: A Codeathon to Combat Antimicrobial Resistance" (September 2024), hosted by NCBI and NIAID.

resistome amr-2024 lee2023

Updated Sep 27, 2024
JavaScript

Improve this page

Add a description, image, and links to the resistome topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the resistome topic, visit your repo's landing page and select "manage topics."