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metabarcoding-data

Here are 5 public repositories matching this topic...

TillMacher / TaxonTableTools

TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data

bioinformatics graphical-interface biological-data-analysis edna biodiversity graphical-user-interface otus otu-table dna-metabarcoding biomonitoring metabarcoding-data

Updated Jan 26, 2023
Python

davidlougheed / snipe

A web tool for optimally choosing eDNA primer pairs to identify a set of taxa.

metabarcoding environmental-dna metabarcoding-data

Updated Nov 16, 2024
TypeScript

envmetagen / metabinkit

Set of programs to perform taxonomic binning.

docker taxonomy binning dna-sequences metabarcoding-data ncbi-taxid binning-thresholds

Updated Apr 2, 2023
R

DavideScarpetta / taxonomic_profiling

Metabarcoding analysis pipeline, using DADA2 and qiime2

bioinformatics bioinformatics-pipeline metabarcoding dada2 cutadapt qiime2 taxonomic-profiling metabarcoding-data

Updated Jan 9, 2024
Shell

chrispersico / SAMBA

Saving Apples with Meta-Barcoding Analysis

taxonomy dna dna-sequences classification-algorithm taxonomic-classification dna-sequencing metabarcoding-data sequences-analysis

Updated Dec 18, 2024
R

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