DFOIL: Introgression Testing for Five Taxa

Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables

Detecting Archaic Introgression from Population Genetic Data with S*

Script for detecting signals of introgression in large set of gene trees from unlinked markers

Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile

Introgression Simulation using ms and seq-gen

Detection of Saccharomyces paradoxus DNA across Saccharomyces cerevisiae, and vice versa.

Code used to analyse WGS data of giraffe in Coimbra et al. 2023

Revealing the Interspecific Breeding History of Hawaiian Macadamia through Transcriptome Sequencing and Analysis 

Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files

Genomic Analysis of Introgressed Alleles with Machine Learning

Haplotype marker based on 3,000 Rice Genomes for subpopulation inference

A modified version of FILET (software for detecting introgression using supervised machine learning), to use for introgression detection between Gonioctena intermedia and Gonioctena quinquepunctata

ABBA-BABA test conducted on Saccharomyces cerevisiae strains using whole-genome alignment.