Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
picard samtools bwa-mem varscan bcftools bowtie2 trimgalore cutadapt fastqc freebayes fastp gatk4 trimmomatic gatk-bestpractices gatk-joint-variant-calling-workflow gatk-cnv gatk4-haplotypecaller
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Updated
Jan 17, 2024 - Shell