Bioconductor facilities for parallel evaluation

Efficient manipulation of biological strings

Representation and manipulation of genomic intervals

[DEPRECATED] An R package for Google Genomics API queries.

A container (S4 class) for matrix-like assays

Utilities for manipulating chromosome names, including modifying them to follow a particular naming style

Annotation of Genetic Variants

Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

Query the gene models of a given organism/assembly

A unified framework for working transparently with on-disk and in-memory array-like datasets

Foundation of integer range manipulation in Bioconductor

Foundation of vector-like and list-like containers in Bioconductor

Client for the Bioconductor AnnotationHub web resource

Manage Files Across Sessions

Issues and pull requests for BiocStyle should go here.

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

Defines many S4 generic functions used in Bioconductor

HDF5 datasets as array-like objects in R

HTSlib high-throughput sequencing library as an R package

Biobase: Base functions for Bioconductor