Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches

R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/

Explore and download data from the recount3 project

Code for the Recount project

Contribute your human Illumina RNA-seq data to recount2

Fast coverage matrices from recount data using bwtool

Public repo for the recount Bioconductor workflow that is visible at http://bioconductor.org/help/workflows/

Example analyses using recount

A Universal IDE agnostic highlighter list for annotation like TODO, FIXME etc (or your own custom annotations)

Package for the recount workshop for BioC2017

Workshop proposal for BioC2019 centered around the recount2 resource