First release to capture MycoSNP-nf v1.4 functionality in WDL
This release is a WDL capture of the MycoSNP-nf v1.4 release (Tremella Snidget) in two separate WDL workflows:
MycoSNP_Variants: a sample-level workflow that will take in read data and call variants against a user-defined reference by invoking the --skip_phylogeny flag of the mycosnp-nf workflow.
MycoSNP_Tree: a set-level workflow that will take in an array of MycoSNP-generated vcf and vcf_index files to perform phylogenetic analysis using the --iqtree flag of the mycosnp-nf workflow.