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tbrittoborges/README.md

Thiago Britto-Borges personal repository


Senior Bioinformatics Researcher | PhD in Bioinformatics and ML | specializing in RNA splicing, post-transcriptional regulation & computational workflow development.

Overview:

I use programming to create systems that enable our team to make data-driven decisions. Specialized in analyzing clinical and OMICs datasets (often dirty in nature) to uncover insights in disease diagnosis, treatment, and treatment mode of action. My expertise spans from developing computational workflows to integrating machine learning techniques on scientific research. I like to use benchmark benchmarking and then leveraging state-of-the-art methodologies to contribute to multidisciplinary teams in computational biology.

Skills & Interests:

  • Proficient in Python and R, keen to learn new languages if required.
  • Tools: Snakemake/Nextflow.
  • Experience interfacing between multidisciplinary teams.
  • Fields of Interest: Bioinformatics/Computational Biology, Interpretable Machine Learning, RNA Splicing, Transcriptomics, Proteomics.

Pinned Loading

  1. dieterich-lab/Baltica dieterich-lab/Baltica Public

    Baltica: integrated differential junction usage

    R 8 3

  2. tedx_uod tedx_uod Public

    Code for tedx_uod website.

    CSS

  3. AnnekathrinSilvia/magnetique AnnekathrinSilvia/magnetique Public

    Source code for the magnetique application

    R 2 3

  4. dieterich-lab/nmdtxdb dieterich-lab/nmdtxdb Public

    Shiny application and code for the database for NMD targets

    R 2

  5. dieterich-lab/nmd-wf dieterich-lab/nmd-wf Public

    R 1

  6. bartongroup/ProteoFAV bartongroup/ProteoFAV Public

    Open-source framework for simple and fast integration of protein structure data with sequence annotations and genetic variation

    Python 3