Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Identify sex (contig ploidy) of samples #83

Open
nh13 opened this issue Jan 20, 2021 · 0 comments
Open

Identify sex (contig ploidy) of samples #83

nh13 opened this issue Jan 20, 2021 · 0 comments

Comments

@nh13
Copy link
Contributor

nh13 commented Jan 20, 2021

I am looking for a way to specify the ploidy of the samples, in particular, for sex chromosomes. I see sexMap in bcf_filtered_reader.cpp is a file that can specify sex, but isn't exposed on the command line. How do we specify the sex for the input samples in the input VCF?
@nh13 nh13 changed the title Identify gender (contig ploidy) of samples Identify sex (contig ploidy) of samples Jan 20, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@nh13