Remove mambaforge usages and update configs to remove EUM-internal readers #419
Workflow file for this run
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| name: CI | |
| # https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#concurrency | |
| # https://docs.github.com/en/developers/webhooks-and-events/events/github-event-types#pullrequestevent | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.type }} | |
| cancel-in-progress: true | |
| on: [push, pull_request] | |
| jobs: | |
| lint: | |
| name: lint and style checks | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 flake8-docstrings flake8-debugger flake8-bugbear pytest | |
| - name: Run linting | |
| run: | | |
| flake8 uwsift/ | |
| website: | |
| name: build website | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: "bash -l {0}" | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Conda Environment | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-version: latest | |
| python-version: "3.11" | |
| environment-file: continuous_integration/environment.yaml | |
| activate-environment: test-environment | |
| channels: conda-forge | |
| - name: Install SIFT | |
| shell: bash -l {0} | |
| run: | | |
| pip install sphinx sphinx_rtd_theme sphinxcontrib-apidoc sphinxcontrib-seqdiag sphinxcontrib-blockdiag blockdiag | |
| pip install --no-deps -e . | |
| - name: Run Sphinx Build | |
| shell: bash -l {0} | |
| run: | | |
| cd doc | |
| make html SPHINXOPTS="-W" | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: "bash -l {0}" | |
| continue-on-error: ${{ matrix.experimental }} | |
| needs: [lint] | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| # XXX: We don't currently have OpenGL installation on other platforms | |
| #os: ["windows-latest", "ubuntu-latest", "macos-latest"] | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.9", "3.11"] | |
| experimental: [false] | |
| include: | |
| - python-version: "3.11" | |
| os: "ubuntu-latest" | |
| experimental: true | |
| env: | |
| PYTHON_VERSION: ${{ matrix.python-version }} | |
| OS: ${{ matrix.os }} | |
| UNSTABLE: ${{ matrix.experimental }} | |
| ACTIONS_ALLOW_UNSECURE_COMMANDS: true | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Prepare System Environment | |
| run: | | |
| # opengl system libraries | |
| sudo apt-get update | |
| cat continuous_integration/linux_full_deps_apt.txt | xargs sudo apt-get -y install | |
| # Start xvfb daemon | |
| export DISPLAY=:99.0 | |
| /sbin/start-stop-daemon --start --quiet --pidfile /tmp/custom_xvfb_99.pid --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -screen 0 1400x900x24 -ac +extension GLX +render | |
| sleep 5 | |
| # export python_version | |
| PY_VER=${{ matrix.python-version }} | |
| echo ::set-output name=python-version::${PY_VER//.} | |
| - name: Setup Conda Environment | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-version: latest | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: continuous_integration/environment.yaml | |
| activate-environment: test-environment | |
| channels: conda-forge | |
| - name: Install unstable dependencies | |
| if: matrix.experimental == true | |
| run: | | |
| python -m pip install \ | |
| --index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple/ \ | |
| --trusted-host pypi.anaconda.org \ | |
| --no-deps --pre --upgrade \ | |
| matplotlib \ | |
| numpy \ | |
| pandas \ | |
| scipy; \ | |
| python -m pip install \ | |
| --no-deps --upgrade \ | |
| git+https://github.com/dask/dask \ | |
| git+https://github.com/dask/distributed \ | |
| git+https://github.com/Unidata/cftime \ | |
| git+https://github.com/mapbox/rasterio \ | |
| git+https://github.com/pydata/bottleneck \ | |
| git+https://github.com/pydata/xarray \ | |
| git+https://github.com/pytroll/satpy; | |
| - name: Install uwsift | |
| run: | | |
| pip install --no-deps -e . | |
| - name: Run unit tests | |
| run: | | |
| export DISPLAY=:99.0 | |
| pytest --cov=uwsift uwsift/tests | |
| - name: Coveralls Parallel | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| flag-name: run-${{ matrix.test_number }} | |
| parallel: true | |
| if: runner.os == 'Linux' | |
| coveralls: | |
| needs: [test] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Coveralls Finished | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| parallel-finished: true |