Merge pull request #423 from ameraner/update_precommit #371
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| # https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#concurrency | |
| # https://docs.github.com/en/developers/webhooks-and-events/events/github-event-types#pullrequestevent | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.type }} | |
| cancel-in-progress: true | |
| on: [push, pull_request] | |
| jobs: | |
| lint: | |
| name: lint and style checks | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 flake8-docstrings flake8-debugger flake8-bugbear pytest | |
| - name: Run linting | |
| run: | | |
| flake8 uwsift/ | |
| website: | |
| name: build website | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: "bash -l {0}" | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Conda Environment | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| python-version: "3.10" | |
| use-mamba: true | |
| environment-file: continuous_integration/environment.yaml | |
| activate-environment: test-environment | |
| - name: Install SIFT | |
| shell: bash -l {0} | |
| run: | | |
| pip install sphinx sphinx_rtd_theme sphinxcontrib-apidoc sphinxcontrib-seqdiag sphinxcontrib-blockdiag blockdiag | |
| pip install --no-deps -e . | |
| - name: Run Sphinx Build | |
| shell: bash -l {0} | |
| run: | | |
| cd doc | |
| make html SPHINXOPTS="-W" | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: "bash -l {0}" | |
| continue-on-error: ${{ matrix.experimental }} | |
| needs: [lint] | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| # XXX: We don't currently have OpenGL installation on other platforms | |
| #os: ["windows-latest", "ubuntu-latest", "macos-latest"] | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.8", "3.10"] | |
| experimental: [false] | |
| include: | |
| - python-version: "3.10" | |
| os: "ubuntu-latest" | |
| experimental: true | |
| env: | |
| PYTHON_VERSION: ${{ matrix.python-version }} | |
| OS: ${{ matrix.os }} | |
| UNSTABLE: ${{ matrix.experimental }} | |
| ACTIONS_ALLOW_UNSECURE_COMMANDS: true | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Prepare System Environment | |
| run: | | |
| # opengl system libraries | |
| sudo apt-get update | |
| cat continuous_integration/linux_full_deps_apt.txt | xargs sudo apt-get -y install | |
| # Start xvfb daemon | |
| export DISPLAY=:99.0 | |
| /sbin/start-stop-daemon --start --quiet --pidfile /tmp/custom_xvfb_99.pid --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -screen 0 1400x900x24 -ac +extension GLX +render | |
| sleep 5 | |
| # export python_version | |
| PY_VER=${{ matrix.python-version }} | |
| echo ::set-output name=python-version::${PY_VER//.} | |
| - name: Setup Conda Environment | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: continuous_integration/environment.yaml | |
| activate-environment: test-environment | |
| - name: Install unstable dependencies | |
| if: matrix.experimental == true | |
| run: | | |
| python -m pip install \ | |
| --index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple/ \ | |
| --trusted-host pypi.anaconda.org \ | |
| --no-deps --pre --upgrade \ | |
| matplotlib \ | |
| numpy \ | |
| pandas \ | |
| scipy; \ | |
| python -m pip install \ | |
| --no-deps --upgrade \ | |
| git+https://github.com/dask/dask \ | |
| git+https://github.com/dask/distributed \ | |
| git+https://github.com/Unidata/cftime \ | |
| git+https://github.com/mapbox/rasterio \ | |
| git+https://github.com/pydata/bottleneck \ | |
| git+https://github.com/pydata/xarray \ | |
| git+https://github.com/pytroll/satpy; | |
| - name: Install uwsift | |
| run: | | |
| pip install --no-deps -e . | |
| - name: Run unit tests | |
| run: | | |
| export DISPLAY=:99.0 | |
| pytest --cov=uwsift uwsift/tests | |
| - name: Coveralls Parallel | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| flag-name: run-${{ matrix.test_number }} | |
| parallel: true | |
| if: runner.os == 'Linux' | |
| coveralls: | |
| needs: [test] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Coveralls Finished | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| parallel-finished: true |