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Update requirements for python 3.11 upgrade - ifu_optimal.ipynb #165

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Oct 20, 2023
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Update requirements for python 3.11 upgrade - ifu_optimal.ipynb #165

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2c1597e
Update requirements for python 3.11 upgrade - ifu_optimal.ipynb
Oct 5, 2023
4e436bb
Update requirements.txt
haticekaratay Oct 20, 2023
3b3f4e6
Address Pep8 style errors
haticekaratay Oct 20, 2023
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21 changes: 4 additions & 17 deletions notebooks/ifu_optimal/ifu_optimal.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,6 @@
"* _scipy_ for gaussian smoothing\n",
"* _specutils_ for Spectrum1D data model\n",
"* _jdaviz_ : Cubeviz data visualization tool\n",
"* _regions_ to read DS9 regions\n",
"* _photutils_ to define circular apertures\n",
"* _astropy.io_ for reading and writing FITS cubes and images\n",
"* _astropy.wcs, units, coordinates_ for defining and reading WCS\n",
Expand All @@ -50,23 +49,13 @@
"outputs": [],
"source": [
"import time\n",
"\n",
"import numpy as np\n",
"\n",
"import scipy\n",
"\n",
"import specutils\n",
"from specutils import Spectrum1D\n",
"\n",
"from jdaviz import Cubeviz\n",
"\n",
"from regions import CircleSkyRegion\n",
"\n",
"from photutils import CircularAperture, SkyCircularAperture, aperture_photometry \n",
"\n",
"from photutils import CircularAperture, aperture_photometry \n",
"from astropy.io import fits\n",
"from astropy import wcs\n",
"import astropy.units as u\n",
"from astropy.stats import sigma_clip\n",
"from astropy.utils.data import download_file"
]
Expand All @@ -88,7 +77,7 @@
"source": [
"## Introduction\n",
"\n",
"This notebook illustrates various extraction methods for a point source in JWST NIRSpec IFU data. First we\n",
" This notebook illustrates various extraction methods for a point source in JWST NIRSpec IFU data. First we\n",
"demonstrate a number of regular extraction techniques, including subset extraction with Cubeviz, simple sum over spaxels, cylindrical aperture, and conical aperture photometry. Then we compare optimal extraction using a WebbPSF model PSF to optimal extraction using a reference star PSF. \n"
]
},
Expand Down Expand Up @@ -178,9 +167,7 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"scrolled": false
},
"metadata": {},
"outputs": [],
"source": [
"cubeviz = Cubeviz()\n",
Expand Down Expand Up @@ -839,7 +826,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.9.7"
"version": "3.11.6"
}
},
"nbformat": 4,
Expand Down
2 changes: 1 addition & 1 deletion notebooks/ifu_optimal/pre-requirements.txt
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@@ -1,2 +1,2 @@
astropy-helpers==2.0.11
astropy-helpers>=2.0.11

32 changes: 16 additions & 16 deletions notebooks/ifu_optimal/requirements.txt
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@@ -1,17 +1,17 @@
notebook==6.1.5
jupyter_client==5.3.5
numpy==1.19.2
scipy==1.5.2
specutils==1.1.1
glue-astronomy==0.1
glue-core==1.0.0
glue-jupyter==0.2.1
glue-vispy-viewers==1.0.1
jdaviz==1.0.3
git+https://github.com/astropy/regions.git
photutils==1.0.1
notebook>=6.1.5
jupyter_client>=5.3.5
numpy>=1.19.2
scipy>=1.5.2
specutils>=1.1.1
glue-astronomy>=0.1
glue-core>=1.0.0
glue-jupyter>=0.2.1
glue-vispy-viewers>=1.0.1
jdaviz>=1.0.3
regions>=0.7
photutils>=1.0.1
astropy>=4.2
matplotlib==3.3.2
ipyvuetify==1.6.2
ipyvue==1.5.0
git+https://github.com/radio-astro-tools/radio-beam.git
matplotlib>=3.3.2
ipyvuetify>=1.6.2
ipyvue>=1.5.0
radio-beam>=0.3.6
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