MIRI and NIRcam PSF photometry with spacephot (#173)

* Update ci_html_build.yml miri lrs extraction techniques url path directory name included techniques with standard star updated with pipeline commands Delete miri_lrs_extraction_techniques.ipynb Delete miri_lrs_extraction_techniques_standard.ipynb Delete miri_lrs_specreduce.ipynb updated requirements [BOT] Left PEP8 feedback on PR 93's notebooks Files: [BOT] Left PEP8 feedback on PR 93's notebooks Files: [BOT] Left PEP8 feedback on PR 93's notebooks Files: [BOT] Left PEP8 feedback on PR 93's notebooks Files: [BOT] Left PEP8 feedback on PR 93's notebooks Files: [BOT] Left PEP8 feedback on PR 93's notebooks Files: Fix some of the style errors to trigger new CI [BOT] Left PEP8 feedback on PR 93's notebooks Files: Fix style errors [BOT] Left PEP8 feedback on PR 93's notebooks Files: pep 8 edits [BOT] Left PEP8 feedback on PR 93's notebooks Files: more pep8 changes [BOT] Left PEP8 feedback on PR 93's notebooks Files: Add dependency descriptions moved crds stuff moved import os [BOT] Left PEP8 feedback on PR 93's notebooks Files: moved import os [BOT] Left PEP8 feedback on PR 93's notebooks Files: Remove bot messages new 87a notebooks new psf photometry notebooks deleted files added by mistake:wq addressed science review photutils notebook * address larry's edits * added some documentation on comparison of space_phot to photutils * first pass at styling * second pass on styling * third pass styling * resolved styling * one last style change * updated comparison of photometry * resolve execution errors * remove pre-rebase files since they have moved to new directories * fix bandit issues and styling * fix styling and imports * add import, fix bandit and styling * fix styling and syntax * fix styling * fix styling * update import * update styling/whitespace * final styling * add import * add import --------- Co-authored-by: M.Gough <[email protected]> Co-authored-by: Ori Fox <[email protected]> Co-authored-by: gibsongreen <[email protected]>
spacetelescope · Nov 21, 2024 · 9f8d6e3 · 9f8d6e3
1 parent 0129d9c
commit 9f8d6e3
Show file tree

Hide file tree

Showing 14 changed files with 7,192 additions and 4 deletions.
diff --git a/.gitignore b/.gitignore
@@ -9,6 +9,15 @@ __pycache__/
 # C extensions
 *.so
 
+
+
+# FITS files
+*.fits
+
+
+
+
+
 # Distribution / packaging
 .Python
 build/

diff --git a/notebooks/MIRI/MIRI_LRS_spectral_extraction/miri_lrs_advanced_extraction_part1.ipynb b/notebooks/MIRI/MIRI_LRS_spectral_extraction/miri_lrs_advanced_extraction_part1.ipynb
@@ -15,6 +15,7 @@
     "**Cross-intrument:** NIRSpec, MIRI.<br>\n",
     "**Documentation:** This notebook is part of a STScI's larger [post-pipeline Data Analysis Tools Ecosystem](https://jwst-docs.stsci.edu/jwst-post-pipeline-data-analysis) and can be [downloaded](https://github.com/spacetelescope/dat_pyinthesky/tree/main/jdat_notebooks/MRS_Mstar_analysis) directly from the [JDAT Notebook Github directory](https://github.com/spacetelescope/jdat_notebooks).<br>\n",
     "\n",
+    "\n",
     "### Introduction: Spectral extraction in the JWST calibration pipeline\n",
     "\n",
     "The JWST calibration pipeline performs spectrac extraction for all spectroscopic data using basic default assumptions that are tuned to produce accurately calibrated spectra for the majority of science cases. This default method is a simple fixed-width boxcar extraction, where the spectrum is summed over a number of pixels along the cross-dispersion axis, over the valid wavelength range. An aperture correction is applied at each pixel along the spectrum to account for flux lost from the finite-width aperture. \n",
@@ -144,7 +145,7 @@
     "if not os.path.exists(\"data/\"):\n",
     "    print(\"Unpacking Data\")\n",
     "    with tarfile.open('./data.tar.gz', \"r:gz\") as tar:\n",
-    "        tar.extractall()"
+    "        tar.extractall(filter='data')"
    ]
   },
   {

diff --git a/notebooks/MIRI/MIRI_LRS_spectral_extraction/requirements.txt b/notebooks/MIRI/MIRI_LRS_spectral_extraction/requirements.txt
@@ -1,5 +1,4 @@
 jdaviz >= 3.6.0
 astropy >= 5.3.1
 jwst >= 1.11.3
-specreduce >= 1.3.0
-
+specreduce >= 1.3.0
-Original file line number
+Diff line change
@@ Expand Up / @@ -9,6 +9,15 @@ __pycache__/ @@
     # C extensions
     *.so
+    # FITS files
+    *.fits
     # Distribution / packaging
     .Python
     build/
@@ Expand Down @@