Enable dense indexing in `FunctionRegistry` and `BuiltinProgram` #1337

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Job	Run time
Coverage	2m 34s
Test (macos-latest, stable)	40s
Test (macos-latest, beta)	39s
Test (macos-latest, nightly)	2m 9s
Test (ubuntu-latest, stable)	2m 6s
Test (ubuntu-latest, beta)	2m 1s
Test (ubuntu-latest, nightly)	4m 38s
Test (windows-latest, stable)	1m 42s
Test (windows-latest, beta)	1m 22s
Test (windows-latest, nightly)	1m 59s
Release	0s
	19m 50s