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Report descriptions #8

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Commits on Jun 9, 2021

  1. descriptions for report for deseq2 pca, volcano, ma and scatter plot … 

    …and for fingerprint and profile plot and for heatmap
    @AntonieV
    AntonieV committed Jun 9, 2021
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Commits on Jun 15, 2021

  1. changes on deseq2 for comparisons of samples across the groups from e… 

    …ach antibody, adaptations for snakemake workflow catalog, more plot descriptions for report, cleanup configs, README and ToDo's
    @AntonieV
    AntonieV committed Jun 15, 2021
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Commits on Jun 16, 2021

  1. report descriptions for homer annotatePeaks and phantompeakqualtools

    @AntonieV
    AntonieV committed Jun 16, 2021
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Commits on Jun 23, 2021

  1. create igv session file

    @AntonieV
    AntonieV committed Jun 23, 2021
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  2. igv session download from report

    @AntonieV
    AntonieV committed Jun 23, 2021
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Commits on Jun 24, 2021

  1. some minor changes on report descriptions

    @AntonieV
    AntonieV committed Jun 24, 2021
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  2. env for zip added and some other minor changes

    @AntonieV
    AntonieV committed Jun 24, 2021
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  3. changes on zip env

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    AntonieV committed Jun 24, 2021
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Commits on Jun 29, 2021

  1. Changes according to PR#8

    @AntonieV
    AntonieV committed Jun 29, 2021
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Commits on Jul 4, 2021

  1. changes on 'find' commands according PR#8

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    AntonieV committed Jul 4, 2021
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Commits on Feb 1, 2022

  1. Update .test/config/config.yaml 

    Co-authored-by: David Laehnemann <[email protected]>
    @AntonieV @dlaehnemann
    AntonieV and dlaehnemann authored Feb 1, 2022
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  2. Update .test/config/config.yaml 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 1, 2022
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  3. Update .test/config_paired_end/config.yaml 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 1, 2022
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  4. Update .test/config_paired_end/config.yaml 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 1, 2022
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  5. Update .test/config_paired_end_reduced/config.yaml 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 1, 2022
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  6. Update .test/config_single_end/config.yaml 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 1, 2022
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  7. Update .test/config_single_end/config.yaml 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 1, 2022
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  8. Update .test/config_single_end_reduced/config.yaml 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 1, 2022
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  9. Update .test/config_single_end_reduced/config.yaml 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 1, 2022
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  10. Update workflow/report/plot_consensus_peak_intersect.rst 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 1, 2022
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  11. Update config/config.yaml 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 1, 2022
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Commits on Feb 2, 2022

  1. Update config.yaml

    @AntonieV
    AntonieV authored Feb 2, 2022
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  2. Update workflow/report/plot_deseq2_FDR_1_perc_MA.rst 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 2, 2022
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  3. Update workflow/report/plot_deseq2_FDR_1_perc_volcano.rst 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 2, 2022
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  4. Update workflow/report/plot_deseq2_FDR_5_perc_MA.rst 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 2, 2022
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  5. Update workflow/report/plot_deseq2_FDR_5_perc_volcano.rst 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 2, 2022
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  6. Update workflow/report/plot_deseq2_heatmap.rst 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 2, 2022
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  7. Update workflow/scripts/featurecounts_deseq2.R 

    Co-authored-by: David Laehnemann <[email protected]>
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  8. Update workflow/scripts/featurecounts_deseq2.R 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 2, 2022
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  9. Update workflow/scripts/featurecounts_deseq2.R 

    Co-authored-by: David Laehnemann <[email protected]>
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  10. Update workflow/scripts/featurecounts_deseq2.R 

    Co-authored-by: David Laehnemann <[email protected]>
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  11. Update workflow/scripts/featurecounts_deseq2.R 

    Co-authored-by: David Laehnemann <[email protected]>
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  12. Update workflow/report/plot_deseq2_pca.rst 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 2, 2022
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  13. Update workflow/report/plot_deseq2_sample_corr_heatmap.rst 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 2, 2022
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  14. Update workflow/report/plot_deseq2_scatter.rst 

    Co-authored-by: David Laehnemann <[email protected]>
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  15. Update workflow/report/plot_heatmap_deeptools.rst 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 2, 2022
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  16. Update workflow/report/plot_macs2_qc.rst 

    Co-authored-by: David Laehnemann <[email protected]>
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    AntonieV and dlaehnemann authored Feb 2, 2022
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  17. Update workflow/report/plot_profile_deeptools.rst 

    Co-authored-by: David Laehnemann <[email protected]>
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Commits on Feb 3, 2022

  1. Changes according PR #8

    @AntonieV
    AntonieV authored Feb 3, 2022
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  2. Changes according PR #8

    @AntonieV
    AntonieV authored Feb 3, 2022
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