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Merge branch 'main' into v0.5.0
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* main:
  BULK-Updates-2024-06-13 (#519)
  BULK-Updates-2024-06-06 (#509)
  LNIC-Updates-2024-06-11 (#514)
  tweak cw threshold description (#512)
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@smnorris
smnorris committed Jun 14, 2024
2 parents faad008 + 38caaf4 commit 7eae252
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48 changes: 47 additions & 1 deletion data/user_habitat_classification.csv
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Expand Up @@ -15247,4 +15247,50 @@
360886968,0,100,KUMR,SK,spawning,t,SN,2023-09-01,Pacific Salmon Foundation,source point snapped to closest stream within 250m
360887120,20,120,TSAY,SK,spawning,t,SN,2023-09-01,Pacific Salmon Foundation,source point snapped to closest stream within 250m
360887414,204,304,KITL,SK,spawning,t,SN,2023-09-01,Pacific Salmon Foundation,source point snapped to closest stream within 250m
360879788,0,100,NASC,SK,spawning,t,SN,2023-09-01,Pacific Salmon Foundation,manually matched
360879788,0,100,NASC,SK,spawning,t,SN,2023-09-01,Pacific Salmon Foundation,manually matched
360804808,253,527.036659,BULK,CH,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,"PSE point is not located on a modelled stream, closest modelled stream line to PSE point was selected."
360864873,633,937,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360864873,1218.44764,1570,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360864873,2726.758367,2759.987934,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360864873,2759.987698,3470.320998,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360863724,3731.574678,4305.947686,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360863724,4746.707562,5251.772658,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360863724,5423.264994,6481.649414,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360863724,8879.167339,9760.187428,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360863724,9828.927197,10178.13952,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360881038,22595.62553,24262.43,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,upstream - 60.693 m
360881038,16287.7434,16620.68,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,upstream + 205.680 m
360881038,13318.00732,13680.67328,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360881038,12252.85924,12361.61961,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360881038,11021.93646,11489.59747,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360881993,13577.3221,13817,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360881993,13154.92876,13260.1015,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360881993,12597.56393,12822.44773,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360881993,11063.15656,12469.67504,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360881993,10256.05868,10783.66856,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360881993,8801.525509,9695.724414,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360881993,8144.75516,8215.652824,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360881993,7354.913446,7606.228152,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360881993,7174.07935,7203.960744,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360881993,6273.923593,6361.483933,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360881993,5335.256936,5380.321258,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360881993,1364.83797,5006.353881,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360881993,696.5582911,845.8527961,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360816308,1905,2218.63,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,Downstream + 194.979 m
360749382,0,1764.93108,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360816176,0,711.7030546,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360716584,406,733.9339867,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360865670,3315.436955,5115.83,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,Upstream - 110.991 m
360886524,697.3901048,845.3869285,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360869846,0,2806.75,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,downstream + 417.402 m
360779258,4147,4929.47,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,downstream +283.473 m
360884501,0,1190.91,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,upstream - 33.269 m
360685108,0,1824.48,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,downstream of + 941.483 m
360766713,0,384.8959035,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,upstream - 82.128 m
360873822,262680.15,263743.7308,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,downstream - 58.527 m
360886221,60433.59806,60611.48,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,upstream + 17.481 m
360886221,60093.67974,60215.14288,BULK,CO,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,
360886614,0,31.22541492,BULK,SK,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,River sockeye
360873822,22478,22509.83251,BULK,SK,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,River sockeye
360873822,168869,170329.9685,BULK,SK,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,River sockeye
360881038,0,280.2148356,BULK,SK,spawning,t,LB,2024-06-06,Pacific Salmon Foundation,Lake sockeye
5 changes: 4 additions & 1 deletion data/user_modelled_crossing_fixes.csv
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Expand Up @@ -21676,4 +21676,7 @@ modelled_crossing_id,structure,watershed_group_code,reviewer_name,review_date,so
24746719,,UNTH,KK,2022-01-19,Bing/Google/ESRI imagery,
24746723,,UNTH,KK,2022-01-19,Bing/Google/ESRI imagery,
24746724,,UNTH,KK,2022-01-19,Bing/Google/ESRI imagery,
24746725,,UNTH,KK,2022-01-26,Bing/Google/ESRI imagery,
24746725,,UNTH,KK,2022-01-26,Bing/Google/ESRI imagery,
11304259,OBS,LNIC,LB,2024-06-11,Bing/Google/ESRI imagery,
11302218,FORD,LNIC,LB,2024-06-12,Bing/Google/ESRI imagery,
11302231,FORD,LNIC,LB,2024-06-13,Bing/Google/ESRI imagery,
2 changes: 2 additions & 0 deletions data/user_pscis_barrier_status.csv
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Expand Up @@ -1319,3 +1319,5 @@ stream_crossing_id,user_barrier_status,watershed_group_code,reviewer_name,review
197017,PASSABLE,LNIC,LB,2024-04-09,"This is a ford, PSCIS barrier_status = UNKNOWN, edit existing record in fix table to PASSABLE"
196200,PASSABLE,TABR,SN,2024-06-03,"Crossing has been remediated, see https://news.gov.bc.ca/releases/2020TRAN0099-001219"
196223,PASSABLE,TABR,SN,2024-06-03,Imagery clearly shows crossing has been remediated with a bridge installation
197664,POTENTIAL,BULK,LB,2024-06-13,Updated to potential barrier for CWF WCRP reporting
197665,POTENTIAL,BULK,LB,2024-06-13,Updated to potential barrier for CWF WCRP reporting
2 changes: 1 addition & 1 deletion docs/03_model_habitat_linear.md
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Expand Up @@ -13,7 +13,7 @@ Linear spawning/rearing habitat modelling is currently based on species specific
Per species threshold values for stream gradient and discharge/channel width are noted (and can be adjusted) in the file [parameters_habitat_thresholds.csv](
https://github.com/smnorris/bcfishpass/blob/main/parameters/example_testing/parameters_habitat_thresholds.csv).

Sources (via literature and analysis) for these values for Pacific salmon and steelhead are documented in Table 1 of [Rebelatto et al (2024)](https://cwf-fcf.org/en/resources/research-papers/BC_report_formatted_final.pdf).
Sources for these values for Pacific salmon and steelhead are documented in Table 1 of [Rebelatto et al (2024)](https://cwf-fcf.org/en/resources/research-papers/BC_report_formatted_final.pdf). Gradient and discharge thresholds are derived from the literature and from analysis of known spawning stream characteristics. Channel width thresholds are designed to eliminate very small streams from consideration. Note that the models will tend to retain many streams that may be of marginal habitat; outputs should be used to assist prioritization for further assessment and fish passage work - not as a definitive habitat classification.

Streams with observed spawning or rearing (from [FISS](https://catalogue.data.gov.bc.ca/dataset/known-bc-fish-observations-and-bc-fish-distributions) via [bcfishobs](https://github.com/smnorris/bcfishobs), PSF's [Pacific Salmon Explorer](https://www.salmonexplorer.ca), and CWF [WCRP](https://www.globalconservationsolutions.com/wp-content/uploads/2022/03/CWF-WCRP-Guide.pdf) stakeholder inputs) are automatically classified as spawning or rearing regardless of stream characteristics.

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