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smaht-dac · Nov 21, 2023 · 88c44b8 · 88c44b8
1 parent 4ef1bbd
commit 88c44b8
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/pipeline_utils/lib/yaml_parser.py b/pipeline_utils/lib/yaml_parser.py
@@ -663,7 +663,7 @@ def to_json(
         # check for secondary formats
         if getattr(self, self.SECONDARY_FORMATS_SCHEMA, None):
             frmt_json[self.EXTRA_FILE_FORMATS_SCHEMA] = getattr(self, self.SECONDARY_FORMATS_SCHEMA)
-        frmt_json[self.STATUS_SCHEMA] = getattr(self, self.STATUS_SCHEMA, 'shared')
+        frmt_json[self.STATUS_SCHEMA] = getattr(self, self.STATUS_SCHEMA, 'released')
 
         # uuid, accession if specified
         if getattr(self, self.UUID_SCHEMA, None):

diff --git a/tests/repo_correct/portal_objects/file_format.yaml b/tests/repo_correct/portal_objects/file_format.yaml
@@ -8,7 +8,7 @@ secondary_formats:
 # file_types:
 #   - FileReference
 #   - FileProcessed
-status: shared
+status: obsolete
 
 ---
 

diff --git a/tests/test_yaml_file_format.py b/tests/test_yaml_file_format.py
@@ -20,7 +20,7 @@ def test_file_format():
                 "submission_centers": ["hms-dbmi"],
                 "consortia": ["cgap-core"],
                 "standard_file_extension": "bam",
-                "status": "shared"
+                "status": "obsolete"
                 # "valid_item_types": ["ReferenceFile", "FileProcessed"]
             },
             {
@@ -31,7 +31,7 @@ def test_file_format():
                 "submission_centers": ["hms-dbmi"],
                 "consortia": ["cgap-core"],
                 "standard_file_extension": "bam.bai",
-                "status": "shared",
+                "status": "released",
                 # "valid_item_types": ["ReferenceFile", "FileProcessed"],
                 "uuid": '1936f246-22e1-45dc-bb5c-9cfd55537fe9'
             }