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Welcome to the topologyzoo wiki!

Converting

To create zoo files: git clone git://github.com/sk2/topologyzoo.git

cd topologyzoo/

you can then convert yed2zoo -d sources/

with the results in sources/zoogml

Geocoding

Use the --geocode parameter: yed2zoo -d sources/ --geocode username

you will need a geonames username from http://www.geonames.org/login

This will geocode each manually.

The output will be present in sources/zoogml_geocoded/

For speed, copy the cache.data file from

https://github.com/sk2/topzootools/tree/master/TopZooTools

into the current working directory

eg

wget https://github.com/sk2/topzootools/blob/master/TopZooTools/cache.data?raw=true

you may need to ignore the certificate error:

wget https://github.com/sk2/topzootools/blob/master/TopZooTools/cache.data?raw=true --no-check-certificate

Converting to other formats

use zooconvert, options are

sk:topologyzoo sk2$ zooconvert  --help
Usage: zooconvert [options]

Options:
-h, --help            show this help message and exit
-f FILE, --file=FILE  Load data from FILE
-d DIRECTORY, --directory=DIRECTORY
                      process directory
-o OUTPUT_DIR, --output_dir=OUTPUT_DIR
                      process directory
--map_dir=MAP_DIR     geoplot map input dir for gallery
--single_edge         Reduce multi edges to single edge
--internal_only       Exclude external nodes
--matlab_keys         Generate list of keys for Matlab
--counts_only         Only record counts for Matlab keys
--matlab              Write Matlab adjacency list Format
--gml                 Write GML Format
--graphml             Write Graphml Format
--dot                 Write GraphViz dot Format
--gexf                Write GEXF Format
--plot                Plot graph
--gallery             Render gallery HTML
--summary_csv         Generate summary data in CSV format
--pickle              Write NetworkX Pickle Format
--archive             Archive converted files
--html                HTML summary

These then go into the converted subdirectory of the target folder. For instance

sk:topologyzoo sk2$ zooconvert -d sources/zoogml_geocoded/ --matlab

sk:topologyzoo sk2$ cat sources/zoogml_geocoded/converted/Aarnet.txt 
0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0
0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0
1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0
0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0
1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 1
0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 1 0
0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0
0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1
0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0