Bump version: 2.0.1 → 2.0.2 #114
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: mambabuild | |
| on: | |
| push: | |
| branches: | |
| - main | |
| env: | |
| atoken: ${{ secrets.ANACONDA_UPLOAD_TOKEN }} | |
| recipe_path: conda/recipe | |
| env_yml_path: conda/env/yml | |
| VERSION: '2.0.2' # versioned by bump2version | |
| jobs: | |
| build_conda_pkgs: | |
| # When merging to one of the branches above and the commit message matches | |
| if: "startsWith(github.event.head_commit.message, 'Bump version:')" | |
| name: Build conda package | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Micromamba setup | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ${{ env.env_yml_path }}/condabuild_env.yml | |
| - name: 🐍 Conda pkg build and upload | |
| run: | | |
| conda mambabuild ${recipe_path}/cpsr -c pcgr -c conda-forge -c bioconda --token ${atoken} | |
| - name: 🔖 Tag creation | |
| uses: actions/github-script@v7 | |
| with: | |
| script: | | |
| const the_tag_name = 'refs/tags/v' + process.env.VERSION | |
| github.rest.git.createRef({ | |
| owner: context.repo.owner, | |
| repo: context.repo.repo, | |
| ref: the_tag_name, | |
| sha: context.sha | |
| }) | |
| pkgdown_site: | |
| # only build pkgdown site on main | |
| if: github.ref_name == 'main' | |
| name: Deploy pkgdown website | |
| runs-on: ubuntu-latest | |
| needs: build_conda_pkgs | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Micromamba setup | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ${{ env.env_yml_path }}/pkgdown.yml | |
| - name: Publish pkgdown website | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Actions" | |
| micromamba activate pkgdown | |
| printf "cpsr version:\n" | |
| Rscript -e "packageVersion('cpsr')" | |
| Rscript -e "pkgdown::deploy_to_branch(pkg = '.', commit_message = 'Built CPSR website: https://sigven.github.io/cpsr/', branch = 'gh-pages', new_process = FALSE)" | |