blobblurb

Summarizes BlobTools output and produces tab-delimited output.

This script is designed to be run on the output of the blobtools pipeline following adding hits from blast and or diamond blast and read depth information.

Dependencies:

• Python3
• Python pandas package
• Python json package
• Python os package
• Python re package
• Python numpy package
• Python scipy package

export PATH=$PATH:[PATH TO blobblurb]

Usage

python blobblurb.py pathToBlobdir pathToBuscoTable

If no arguments are provided, the script will return help message.

Output

• ./{blobdir prefix}_bloblurbout.tsv

Citation

If this script is useful to you, please cite the following in your publication:

@software{blobblurb,
  author = {Sim, Sheina B.},
  title = {blobblurb},
  url = {https://github.com/sheinasim/blobblurb}
}

Sheina B. Sim
USDA-ARS
US Pacific Basin Agricultural Research Service
Hilo, Hawaii, 96720 USA
[email protected]

This script is in the public domain in the United States per 17 U.S.C. § 105