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Remove a couple of old seurat links
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seandavi authored Apr 9, 2019
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Expand Up @@ -241,8 +241,8 @@ List of software packages (and the people developing these methods) for single-c
- [SCPortalen](http://single-cell.clst.riken.jp/) - SCPortalen: human and mouse single-cell centric database. [ref](https://doi.org/10.1093/nar/gkx949)
- [scRNA.seq.datasets](https://hemberg-lab.github.io/scRNA.seq.datasets) - Collection of public scRNA-Seq datasets used by [Hemberg Lab](http://www.sanger.ac.uk/science/groups/hemberg-group)
- [scRNASeqDB](https://bioinfo.uth.edu/scrnaseqdb/) - A database aggregating human single-cell RNA-seq datasets. [ref](http://biorxiv.org/content/early/2017/01/31/104810)
- [SeuratWizard](https://github.com/nasqar/SeuratWizard/) - a web-based (wizard style) interactive R Shiny application to perform guided single-cell RNA-seq data analysis and clustering based on [Seurat - Guided Clustering Tutorial (V2)](https://satijalab.org/seurat/pbmc3k_tutorial.html). [demo](http://nasqar.abudhabi.nyu.edu/SeuratWizard)
- [SeuratV3Wizard](https://github.com/nasqar/seuratv3wizard) - a web-based (wizard style) interactive R Shiny application to perform guided single-cell RNA-seq data analysis and clustering based on [Seurat - Guided Clustering Tutorial (V3 alpha)](https://satijalab.org/seurat/pbmc3k_tutorial_v3.html). [demo](http://nasqar.abudhabi.nyu.edu/SeuratV3Wizard/)
- [SeuratWizard](https://github.com/nasqar/SeuratWizard/) - a web-based (wizard style) interactive R Shiny application to perform guided single-cell RNA-seq data analysis and clustering. [demo](http://nasqar.abudhabi.nyu.edu/SeuratWizard)
- [SeuratV3Wizard](https://github.com/nasqar/seuratv3wizard) - a web-based (wizard style) interactive R Shiny application to perform guided single-cell RNA-seq data analysis and clustering based on Seurat v3. [demo](http://nasqar.abudhabi.nyu.edu/SeuratV3Wizard/)
- [ShinyCortex](https://bioinf.eva.mpg.de/shiny/sample-apps/ShinyCortex/) - a resource that brings together data from recent scRNA-seq studies of the developing cortex for further analysis. ShinyCortex is based in R and displays recently published scRNA-seq data from the human and mouse cortex in a comprehensible, dynamic and accessible way, suitable for data exploration by biologists. [paper](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5962798/)
- [Single Cell Portal](https://portals.broadinstitute.org/single_cell) - The Single-Cell Portal was developed to facilitate open data and open science in Single-cell Genomics. The portal currently focuses on sharing scientific results interactively, and sharing associated datasets.
- [singleCellTK](https://bioconductor.org/packages/release/bioc/html/singleCellTK.html) - The singleCellTK is an R/Shiny package and GUI for analyzing and visualizing scRNA-Seq through a web interface. Analysis modules include data summary and filtering, dimensionality reduction and clustering, batch correction, differential expression analysis, pathway activity analysis, and power analysis.
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