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Deployed from seahorce-scidac/ROMSX
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@asalmgren
asalmgren committed Nov 30, 2023
1 parent 1f9fba9 commit 67b845b
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Showing 15 changed files with 2,438 additions and 2,738 deletions.
1,086 changes: 540 additions & 546 deletions ROMSX_8H_source.html
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6 changes: 3 additions & 3 deletions classROMSX-members.html
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<tr><td class="entry"><a class="el" href="classROMSX.html#ac395453aa10633a05bb7323b2946101e">t_old</a></td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classROMSX.html#a5abd4890b0a7b5939c66c6af3d9bb6c2">timeStep</a>(int lev, amrex::Real time, int iteration)</td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr><td class="entry"><a class="el" href="classROMSX.html#a07e31a4dec6fc9e9d1ec3f1e96381c53">total_plot_file_step_1</a></td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classROMSX.html#acb20056f1e64a04c971525ad026c0787">update_massflux_3d</a>(const amrex::Box &amp;bx, const int ioff, const int joff, amrex::Array4&lt; amrex::Real &gt; phi, amrex::Array4&lt; amrex::Real &gt; Hphi, amrex::Array4&lt; amrex::Real &gt; Hz, amrex::Array4&lt; amrex::Real &gt; on_u_or_om_v, amrex::Array4&lt; amrex::Real &gt; Dphi1, amrex::Array4&lt; amrex::Real &gt; Dphi2, amrex::Array4&lt; amrex::Real &gt; DC, amrex::Array4&lt; amrex::Real &gt; FC, amrex::Array4&lt; amrex::Real &gt; CF, const int nnew)</td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classROMSX.html#a3f7aca1a60cde8f929be65152e530c69">update_massflux_3d</a>(const amrex::Box &amp;bx, const int ioff, const int joff, amrex::Array4&lt; amrex::Real &gt; phi, amrex::Array4&lt; amrex::Real &gt; Hphi, amrex::Array4&lt; amrex::Real const &gt; Hz, amrex::Array4&lt; amrex::Real &gt; on_u_or_om_v, amrex::Array4&lt; amrex::Real const &gt; Dphi1, amrex::Array4&lt; amrex::Real const &gt; Dphi2, amrex::Array4&lt; amrex::Real &gt; DC, amrex::Array4&lt; amrex::Real &gt; FC, amrex::Array4&lt; amrex::Real &gt; CF, const int nnew)</td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classROMSX.html#a39cc4340b94a3842a4d7ef7d06a03ffc">update_vel_3d</a>(const amrex::Box &amp;bx, const amrex::Box &amp;gbx, const int ioff, const int joff, amrex::Array4&lt; amrex::Real &gt; vel, amrex::Array4&lt; amrex::Real &gt; vel_old, amrex::Array4&lt; amrex::Real &gt; rvel, amrex::Array4&lt; amrex::Real &gt; Hz, amrex::Array4&lt; amrex::Real &gt; Akv, amrex::Array4&lt; amrex::Real &gt; pm, amrex::Array4&lt; amrex::Real &gt; pn, amrex::Array4&lt; amrex::Real &gt; DC, amrex::Array4&lt; amrex::Real &gt; FC, amrex::Array4&lt; amrex::Real &gt; sstr, amrex::Array4&lt; amrex::Real &gt; bstr, amrex::Array4&lt; amrex::Real &gt; z_r, const int iic, const int ntfirst, const int nnew, int nstp, int nrhs, int N, const amrex::Real lambda, const amrex::Real dt_lev)</td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classROMSX.html#a1e111db2e680a1a90e4f1ddd37212ba6">use_tracer_particles</a></td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
<tr><td class="entry"><a class="el" href="classROMSX.html#aa798f03140762a614e58b368dbd37ae6">uv3dmix</a>(const amrex::Box &amp;bx, const amrex::Box &amp;gbx, amrex::Array4&lt; amrex::Real &gt; u, amrex::Array4&lt; amrex::Real &gt; v, amrex::Array4&lt; amrex::Real &gt; uold, amrex::Array4&lt; amrex::Real &gt; vold, amrex::Array4&lt; amrex::Real &gt; rufrc, amrex::Array4&lt; amrex::Real &gt; rvfrc, amrex::Array4&lt; amrex::Real &gt; visc2_p, amrex::Array4&lt; amrex::Real &gt; visc2_r, amrex::Array4&lt; amrex::Real &gt; Hz, amrex::Array4&lt; amrex::Real &gt; om_r, amrex::Array4&lt; amrex::Real &gt; on_r, amrex::Array4&lt; amrex::Real &gt; om_p, amrex::Array4&lt; amrex::Real &gt; on_p, amrex::Array4&lt; amrex::Real &gt; pm, amrex::Array4&lt; amrex::Real &gt; pn, int nrhs, int nnew, const amrex::Real dt_lev)</td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classROMSX.html#ab962f23dc27b3ce17bb19e3b8c9991f8">vec_Zt_avg1</a></td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classROMSX.html#a86fcc7e51eaaa5c7a5414eeb853216d3">velocity_names</a></td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classROMSX.html#ab37afaafcf05a9b10c0fba3180539610">verbose</a></td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
<tr><td class="entry"><a class="el" href="classROMSX.html#a3876e9c37fd6291a0f502b6c7e7aeb11">vert_mean_3d</a>(const amrex::Box &amp;bx, const int ioff, const int joff, amrex::Array4&lt; amrex::Real &gt; phi, amrex::Array4&lt; amrex::Real &gt; Hz, amrex::Array4&lt; amrex::Real &gt; Hzk, amrex::Array4&lt; amrex::Real &gt; oHz, amrex::Array4&lt; amrex::Real &gt; Dphi_avg1, amrex::Array4&lt; amrex::Real &gt; Akv, amrex::Array4&lt; amrex::Real &gt; BC, amrex::Array4&lt; amrex::Real &gt; DC, amrex::Array4&lt; amrex::Real &gt; FC, amrex::Array4&lt; amrex::Real &gt; CF, amrex::Array4&lt; amrex::Real &gt; dxlen, const int nnew, const int N, const amrex::Real dt_lev)</td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classROMSX.html#a02bd6266f0576c515cac5a2d4475695a">vert_visc_3d</a>(const amrex::Box &amp;bx, const int ioff, const int joff, amrex::Array4&lt; amrex::Real &gt; phi, amrex::Array4&lt; amrex::Real &gt; Hz, amrex::Array4&lt; amrex::Real &gt; Hzk, amrex::Array4&lt; amrex::Real &gt; oHz, amrex::Array4&lt; amrex::Real &gt; AK, amrex::Array4&lt; amrex::Real &gt; Akv, amrex::Array4&lt; amrex::Real &gt; BC, amrex::Array4&lt; amrex::Real &gt; DC, amrex::Array4&lt; amrex::Real &gt; FC, amrex::Array4&lt; amrex::Real &gt; CF, const int nnew, const int N, const amrex::Real dt_lev)</td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classROMSX.html#ad3bb9347625aef307add2c82a9b21d10">vert_mean_3d</a>(const amrex::Box &amp;bx, const int ioff, const int joff, amrex::Array4&lt; amrex::Real &gt; phi, amrex::Array4&lt; amrex::Real const &gt; Hz, amrex::Array4&lt; amrex::Real const &gt; Dphi_avg1, amrex::Array4&lt; amrex::Real &gt; DC, amrex::Array4&lt; amrex::Real &gt; CF, amrex::Array4&lt; amrex::Real &gt; dxlen, const int nnew, const int N)</td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classROMSX.html#a3a506eb0db4a850e63f4479269a97b38">vert_visc_3d</a>(const amrex::Box &amp;bx, const int ioff, const int joff, amrex::Array4&lt; amrex::Real &gt; phi, amrex::Array4&lt; amrex::Real const &gt; Hz, amrex::Array4&lt; amrex::Real &gt; Hzk, amrex::Array4&lt; amrex::Real &gt; oHz, amrex::Array4&lt; amrex::Real &gt; AK, amrex::Array4&lt; amrex::Real &gt; Akv, amrex::Array4&lt; amrex::Real &gt; BC, amrex::Array4&lt; amrex::Real &gt; DC, amrex::Array4&lt; amrex::Real &gt; FC, amrex::Array4&lt; amrex::Real &gt; CF, const int nnew, const int N, const amrex::Real dt_lev)</td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classROMSX.html#a65203858561c0499791ef95ef51f3447">volWgtSumMF</a>(int lev, const amrex::MultiFab &amp;mf, int comp, bool local, bool finemask)</td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classROMSX.html#a08b14a766ed31e1f6a9ccec0c7f64618">writeBuildInfo</a>(std::ostream &amp;os)</td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
<tr><td class="entry"><a class="el" href="classROMSX.html#acc4b85fa57f43aa0f68f33c4edd82611">WriteCheckpointFile</a>() const</td><td class="entry"><a class="el" href="classROMSX.html">ROMSX</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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