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@asalmgren
asalmgren committed Dec 14, 2023
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14 changes: 7 additions & 7 deletions ROMSX_8H_source.html
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<div class="ttc" id="aclassROMSX_html_a21dcccced847102e553281c1852ce005"><div class="ttname"><a href="classROMSX.html#a21dcccced847102e553281c1852ce005">ROMSX::vec_Hvom</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; vec_Hvom</div><div class="ttdef"><b>Definition:</b> ROMSX.H:201</div></div>
<div class="ttc" id="aclassROMSX_html_a21df816ace6144ce0ed78d0031eaa946"><div class="ttname"><a href="classROMSX.html#a21df816ace6144ce0ed78d0031eaa946">ROMSX::solverChoice</a></div><div class="ttdeci">static SolverChoice solverChoice</div><div class="ttdef"><b>Definition:</b> ROMSX.H:847</div></div>
<div class="ttc" id="aclassROMSX_html_a22dfd39392c026bd023c8f1d57fd0889"><div class="ttname"><a href="classROMSX.html#a22dfd39392c026bd023c8f1d57fd0889">ROMSX::stop_time</a></div><div class="ttdeci">amrex::Real stop_time</div><div class="ttdef"><b>Definition:</b> ROMSX.H:798</div></div>
<div class="ttc" id="aclassROMSX_html_a243ea260c190601764cb8b6368d18615"><div class="ttname"><a href="classROMSX.html#a243ea260c190601764cb8b6368d18615">ROMSX::AverageDownTo</a></div><div class="ttdeci">void AverageDownTo(int crse_lev)</div><div class="ttdef"><b>Definition:</b> ROMSX.cpp:542</div></div>
<div class="ttc" id="aclassROMSX_html_a243ea260c190601764cb8b6368d18615"><div class="ttname"><a href="classROMSX.html#a243ea260c190601764cb8b6368d18615">ROMSX::AverageDownTo</a></div><div class="ttdeci">void AverageDownTo(int crse_lev)</div><div class="ttdef"><b>Definition:</b> ROMSX.cpp:545</div></div>
<div class="ttc" id="aclassROMSX_html_a2491883c8e50f6734a2c474d65817824"><div class="ttname"><a href="classROMSX.html#a2491883c8e50f6734a2c474d65817824">ROMSX::Evolve</a></div><div class="ttdeci">void Evolve()</div><div class="ttdef"><b>Definition:</b> ROMSX.cpp:129</div></div>
<div class="ttc" id="aclassROMSX_html_a24f02b944df51884168ab0c08c736c91"><div class="ttname"><a href="classROMSX.html#a24f02b944df51884168ab0c08c736c91">ROMSX::vec_Huon</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; vec_Huon</div><div class="ttdef"><b>Definition:</b> ROMSX.H:199</div></div>
<div class="ttc" id="aclassROMSX_html_a25ecb4567ed2adbaf9be2fbae65d3640"><div class="ttname"><a href="classROMSX.html#a25ecb4567ed2adbaf9be2fbae65d3640">ROMSX::last_plot_file_step_2</a></div><div class="ttdeci">int last_plot_file_step_2</div><div class="ttdef"><b>Definition:</b> ROMSX.H:786</div></div>
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<div class="ttc" id="aclassROMSX_html_a3ebadda9dbf9fbf5fd040bb1df0f18c3"><div class="ttname"><a href="classROMSX.html#a3ebadda9dbf9fbf5fd040bb1df0f18c3">ROMSX::domain_bc_type</a></div><div class="ttdeci">amrex::Array&lt; std::string, 2 *AMREX_SPACEDIM &gt; domain_bc_type</div><div class="ttdef"><b>Definition:</b> ROMSX.H:777</div></div>
<div class="ttc" id="aclassROMSX_html_a44a44e4d82bc38d55daa03f281437113"><div class="ttname"><a href="classROMSX.html#a44a44e4d82bc38d55daa03f281437113">ROMSX::vec_svstr</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; vec_svstr</div><div class="ttdef"><b>Definition:</b> ROMSX.H:238</div></div>
<div class="ttc" id="aclassROMSX_html_a45591c69e52ac45b762eaa78880c6229"><div class="ttname"><a href="classROMSX.html#a45591c69e52ac45b762eaa78880c6229">ROMSX::init_stuff</a></div><div class="ttdeci">void init_stuff(int lev, const amrex::BoxArray &amp;ba, const amrex::DistributionMapping &amp;dm)</div><div class="ttdef"><b>Definition:</b> ROMSX_make_new_level.cpp:188</div></div>
<div class="ttc" id="aclassROMSX_html_a48b99337b5ac313ce48a95ab0b9e73dc"><div class="ttname"><a href="classROMSX.html#a48b99337b5ac313ce48a95ab0b9e73dc">ROMSX::set_vmix</a></div><div class="ttdeci">void set_vmix(int lev)</div><div class="ttdef"><b>Definition:</b> ROMSX.cpp:369</div></div>
<div class="ttc" id="aclassROMSX_html_a48b99337b5ac313ce48a95ab0b9e73dc"><div class="ttname"><a href="classROMSX.html#a48b99337b5ac313ce48a95ab0b9e73dc">ROMSX::set_vmix</a></div><div class="ttdeci">void set_vmix(int lev)</div><div class="ttdef"><b>Definition:</b> ROMSX.cpp:370</div></div>
<div class="ttc" id="aclassROMSX_html_a4e8f6e71ae2c366a6455882d029de926"><div class="ttname"><a href="classROMSX.html#a4e8f6e71ae2c366a6455882d029de926">ROMSX::ComputeGhostCells</a></div><div class="ttdeci">AMREX_FORCE_INLINE int ComputeGhostCells(const int &amp;spatial_order)</div><div class="ttdef"><b>Definition:</b> ROMSX.H:917</div></div>
<div class="ttc" id="aclassROMSX_html_a514fa82950fa541fb1ebde3f9230eb51"><div class="ttname"><a href="classROMSX.html#a514fa82950fa541fb1ebde3f9230eb51">ROMSX::post_update</a></div><div class="ttdeci">void post_update(amrex::MultiFab &amp;state_mf, const amrex::Real time, const amrex::Geometry &amp;geom)</div></div>
<div class="ttc" id="aclassROMSX_html_a52a5f265a370595f128046c31b9f31d5"><div class="ttname"><a href="classROMSX.html#a52a5f265a370595f128046c31b9f31d5">ROMSX::vec_rvfrc</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; vec_rvfrc</div><div class="ttdef"><b>Definition:</b> ROMSX.H:209</div></div>
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<div class="ttc" id="aclassROMSX_html_a570a9208f8598e95442e4c5717902638"><div class="ttname"><a href="classROMSX.html#a570a9208f8598e95442e4c5717902638">ROMSX::setPlotVariables</a></div><div class="ttdeci">void setPlotVariables(const std::string &amp;pp_plot_var_names, amrex::Vector&lt; std::string &gt; &amp;plot_var_names)</div><div class="ttdef"><b>Definition:</b> Plotfile.cpp:9</div></div>
<div class="ttc" id="aclassROMSX_html_a57d541b3753f65c8359d606869b31a25"><div class="ttname"><a href="classROMSX.html#a57d541b3753f65c8359d606869b31a25">ROMSX::ClearLevel</a></div><div class="ttdeci">virtual void ClearLevel(int lev) override</div><div class="ttdef"><b>Definition:</b> ROMSX_make_new_level.cpp:304</div></div>
<div class="ttc" id="aclassROMSX_html_a58c4b17d8ae67640e6248d93d3317581"><div class="ttname"><a href="classROMSX.html#a58c4b17d8ae67640e6248d93d3317581">ROMSX::set_massflux_3d</a></div><div class="ttdeci">void set_massflux_3d(amrex::Array4&lt; amrex::Real &gt; u, amrex::Array4&lt; amrex::Real &gt; Hu, amrex::Array4&lt; amrex::Real &gt; on_u, amrex::Array4&lt; amrex::Real &gt; v, amrex::Array4&lt; amrex::Real &gt; Hv, amrex::Array4&lt; amrex::Real &gt; om_v, amrex::Array4&lt; amrex::Real const &gt; Hz)</div><div class="ttdef"><b>Definition:</b> ROMSX_set_massflux_3d.cpp:17</div></div>
<div class="ttc" id="aclassROMSX_html_a5a73ffdd93eed4bef7f0d3c6bdac0e6e"><div class="ttname"><a href="classROMSX.html#a5a73ffdd93eed4bef7f0d3c6bdac0e6e">ROMSX::AverageDown</a></div><div class="ttdeci">void AverageDown()</div><div class="ttdef"><b>Definition:</b> ROMSX.cpp:532</div></div>
<div class="ttc" id="aclassROMSX_html_a5a73ffdd93eed4bef7f0d3c6bdac0e6e"><div class="ttname"><a href="classROMSX.html#a5a73ffdd93eed4bef7f0d3c6bdac0e6e">ROMSX::AverageDown</a></div><div class="ttdeci">void AverageDown()</div><div class="ttdef"><b>Definition:</b> ROMSX.cpp:535</div></div>
<div class="ttc" id="aclassROMSX_html_a5a981dafaf65d2d8d96f16e1e7467eb2"><div class="ttname"><a href="classROMSX.html#a5a981dafaf65d2d8d96f16e1e7467eb2">ROMSX::vec_bvstr</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; vec_bvstr</div><div class="ttdef"><b>Definition:</b> ROMSX.H:244</div></div>
<div class="ttc" id="aclassROMSX_html_a5abd4890b0a7b5939c66c6af3d9bb6c2"><div class="ttname"><a href="classROMSX.html#a5abd4890b0a7b5939c66c6af3d9bb6c2">ROMSX::timeStep</a></div><div class="ttdeci">void timeStep(int lev, amrex::Real time, int iteration)</div><div class="ttdef"><b>Definition:</b> ROMSX_TimeStep.cpp:9</div></div>
<div class="ttc" id="aclassROMSX_html_a5d120bfdaf2972b92fda49a4c1bbc43d"><div class="ttname"><a href="classROMSX.html#a5d120bfdaf2972b92fda49a4c1bbc43d">ROMSX::Advance</a></div><div class="ttdeci">void Advance(int lev, amrex::Real time, amrex::Real dt_lev, int iteration, int ncycle)</div><div class="ttdef"><b>Definition:</b> ROMSX_Advance.cpp:7</div></div>
<div class="ttc" id="aclassROMSX_html_a5dd9fc911df600f1eb0e8f3c131d8353"><div class="ttname"><a href="classROMSX.html#a5dd9fc911df600f1eb0e8f3c131d8353">ROMSX::set_hmixcoef</a></div><div class="ttdeci">void set_hmixcoef(int lev)</div><div class="ttdef"><b>Definition:</b> ROMSX.cpp:377</div></div>
<div class="ttc" id="aclassROMSX_html_a5dd9fc911df600f1eb0e8f3c131d8353"><div class="ttname"><a href="classROMSX.html#a5dd9fc911df600f1eb0e8f3c131d8353">ROMSX::set_hmixcoef</a></div><div class="ttdeci">void set_hmixcoef(int lev)</div><div class="ttdef"><b>Definition:</b> ROMSX.cpp:379</div></div>
<div class="ttc" id="aclassROMSX_html_a606d7f526ef409ef78feb8ce127f98c9"><div class="ttname"><a href="classROMSX.html#a606d7f526ef409ef78feb8ce127f98c9">ROMSX::mapfac_m</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; mapfac_m</div><div class="ttdef"><b>Definition:</b> ROMSX.H:761</div></div>
<div class="ttc" id="aclassROMSX_html_a607e27d43f6eaebcf557c4ae17b8039a"><div class="ttname"><a href="classROMSX.html#a607e27d43f6eaebcf557c4ae17b8039a">ROMSX::vec_bustr</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; vec_bustr</div><div class="ttdef"><b>Definition:</b> ROMSX.H:242</div></div>
<div class="ttc" id="aclassROMSX_html_a62d0fa7d294be023f9050f71bb0ad221"><div class="ttname"><a href="classROMSX.html#a62d0fa7d294be023f9050f71bb0ad221">ROMSX::setup_step</a></div><div class="ttdeci">void setup_step(int lev, amrex::Real time, amrex::Real dt_lev)</div><div class="ttdef"><b>Definition:</b> ROMSX_setup_step.cpp:7</div></div>
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<div class="ttc" id="aclassROMSX_html_a6d17615a53d63c67d12c657c9b5dade5"><div class="ttname"><a href="classROMSX.html#a6d17615a53d63c67d12c657c9b5dade5">ROMSX::fine_mask</a></div><div class="ttdeci">amrex::MultiFab fine_mask</div><div class="ttdef"><b>Definition:</b> ROMSX.H:913</div></div>
<div class="ttc" id="aclassROMSX_html_a6efd311333adc503a24d5b3364c4a2d3"><div class="ttname"><a href="classROMSX.html#a6efd311333adc503a24d5b3364c4a2d3">ROMSX::h_havg_density</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Real &gt; h_havg_density</div><div class="ttdef"><b>Definition:</b> ROMSX.H:895</div></div>
<div class="ttc" id="aclassROMSX_html_a6fd2ffd8760dc3b1d68392d18cc728ae"><div class="ttname"><a href="classROMSX.html#a6fd2ffd8760dc3b1d68392d18cc728ae">ROMSX::plot_var_names_1</a></div><div class="ttdeci">amrex::Vector&lt; std::string &gt; plot_var_names_1</div><div class="ttdef"><b>Definition:</b> ROMSX.H:833</div></div>
<div class="ttc" id="aclassROMSX_html_a7137f5e39d218263180f04072cb93b73"><div class="ttname"><a href="classROMSX.html#a7137f5e39d218263180f04072cb93b73">ROMSX::set_smflux</a></div><div class="ttdeci">void set_smflux(int lev, amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ROMSX.cpp:387</div></div>
<div class="ttc" id="aclassROMSX_html_a7137f5e39d218263180f04072cb93b73"><div class="ttname"><a href="classROMSX.html#a7137f5e39d218263180f04072cb93b73">ROMSX::set_smflux</a></div><div class="ttdeci">void set_smflux(int lev, amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ROMSX.cpp:390</div></div>
<div class="ttc" id="aclassROMSX_html_a72cbded1c13914c8b88cd81ee1a95824"><div class="ttname"><a href="classROMSX.html#a72cbded1c13914c8b88cd81ee1a95824">ROMSX::check_type</a></div><div class="ttdeci">std::string check_type</div><div class="ttdef"><b>Definition:</b> ROMSX.H:829</div></div>
<div class="ttc" id="aclassROMSX_html_a735045f231ea51402d057488fe972227"><div class="ttname"><a href="classROMSX.html#a735045f231ea51402d057488fe972227">ROMSX::nc_init_file</a></div><div class="ttdeci">static amrex::Vector&lt; amrex::Vector&lt; std::string &gt; &gt; nc_init_file</div><div class="ttdef"><b>Definition:</b> ROMSX.H:870</div></div>
<div class="ttc" id="aclassROMSX_html_a750d5e2613cd056f28a42a7eb950be05"><div class="ttname"><a href="classROMSX.html#a750d5e2613cd056f28a42a7eb950be05">ROMSX::ReadCheckpointFile</a></div><div class="ttdeci">void ReadCheckpointFile()</div><div class="ttdef"><b>Definition:</b> Checkpoint.cpp:177</div></div>
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<div class="ttc" id="aclassROMSX_html_aac116ec30618bbd5641218e7522cdb86"><div class="ttname"><a href="classROMSX.html#aac116ec30618bbd5641218e7522cdb86">ROMSX::t_new</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Real &gt; t_new</div><div class="ttdef"><b>Definition:</b> ROMSX.H:753</div></div>
<div class="ttc" id="aclassROMSX_html_aad35c03f38c28e55791b50da18f2604c"><div class="ttname"><a href="classROMSX.html#aad35c03f38c28e55791b50da18f2604c">ROMSX::stretch_transform</a></div><div class="ttdeci">void stretch_transform(int lev)</div><div class="ttdef"><b>Definition:</b> DepthStretchTransform.H:12</div></div>
<div class="ttc" id="aclassROMSX_html_aae2265fdbf5360bf2409b673135281a7"><div class="ttname"><a href="classROMSX.html#aae2265fdbf5360bf2409b673135281a7">ROMSX::post_timestep</a></div><div class="ttdeci">void post_timestep(int nstep, amrex::Real time, amrex::Real dt_lev)</div><div class="ttdef"><b>Definition:</b> ROMSX.cpp:212</div></div>
<div class="ttc" id="aclassROMSX_html_aae7ba5940968ecd9397fa506a7082933"><div class="ttname"><a href="classROMSX.html#aae7ba5940968ecd9397fa506a7082933">ROMSX::init_only</a></div><div class="ttdeci">void init_only(int lev, amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ROMSX.cpp:396</div></div>
<div class="ttc" id="aclassROMSX_html_aae7ba5940968ecd9397fa506a7082933"><div class="ttname"><a href="classROMSX.html#aae7ba5940968ecd9397fa506a7082933">ROMSX::init_only</a></div><div class="ttdeci">void init_only(int lev, amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ROMSX.cpp:399</div></div>
<div class="ttc" id="aclassROMSX_html_aaf5a8c8dcd7e6c993fea4acf2845e3d0"><div class="ttname"><a href="classROMSX.html#aaf5a8c8dcd7e6c993fea4acf2845e3d0">ROMSX::estTimeStep</a></div><div class="ttdeci">amrex::Real estTimeStep(int lev) const</div><div class="ttdef"><b>Definition:</b> ROMSX_ComputeTimestep.cpp:40</div></div>
<div class="ttc" id="aclassROMSX_html_aaf9f32897499d17bad9d80230331db6a"><div class="ttname"><a href="classROMSX.html#aaf9f32897499d17bad9d80230331db6a">ROMSX::rhs_t_3d</a></div><div class="ttdeci">void rhs_t_3d(const amrex::Box &amp;bx, const amrex::Box &amp;gbx, amrex::Array4&lt; amrex::Real &gt; t, amrex::Array4&lt; amrex::Real &gt; tempstore, amrex::Array4&lt; amrex::Real &gt; Huon, amrex::Array4&lt; amrex::Real &gt; Hvom, amrex::Array4&lt; amrex::Real &gt; Hz, amrex::Array4&lt; amrex::Real &gt; oHz, amrex::Array4&lt; amrex::Real &gt; pn, amrex::Array4&lt; amrex::Real &gt; pm, amrex::Array4&lt; amrex::Real &gt; W, amrex::Array4&lt; amrex::Real &gt; FC, int nrhs, int nnew, int N, const amrex::Real dt_lev)</div><div class="ttdef"><b>Definition:</b> ROMSX_rhs_t_3d.cpp:28</div></div>
<div class="ttc" id="aclassROMSX_html_ab026fffd3c4e9a9ef612cbb23132a1f5"><div class="ttname"><a href="classROMSX.html#ab026fffd3c4e9a9ef612cbb23132a1f5">ROMSX::vec_zeta</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; vec_zeta</div><div class="ttdef"><b>Definition:</b> ROMSX.H:265</div></div>
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<div class="ttc" id="aclassROMSX_html_ae1071e0c88d861f589184ad86ff14774"><div class="ttname"><a href="classROMSX.html#ae1071e0c88d861f589184ad86ff14774">ROMSX::sst</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; sst</div><div class="ttdef"><b>Definition:</b> ROMSX.H:765</div></div>
<div class="ttc" id="aclassROMSX_html_ae2d89ab211dd0d324dda03720b8c4bff"><div class="ttname"><a href="classROMSX.html#ae2d89ab211dd0d324dda03720b8c4bff">ROMSX::restart_chkfile</a></div><div class="ttdeci">std::string restart_chkfile</div><div class="ttdef"><b>Definition:</b> ROMSX.H:801</div></div>
<div class="ttc" id="aclassROMSX_html_ae308f7068f2eb8e48913fc77d32f9065"><div class="ttname"><a href="classROMSX.html#ae308f7068f2eb8e48913fc77d32f9065">ROMSX::datalogname</a></div><div class="ttdeci">amrex::Vector&lt; std::string &gt; datalogname</div><div class="ttdef"><b>Definition:</b> ROMSX.H:995</div></div>
<div class="ttc" id="aclassROMSX_html_ae3543d5a8078423ea4ac399ee53a67b9"><div class="ttname"><a href="classROMSX.html#ae3543d5a8078423ea4ac399ee53a67b9">ROMSX::ReadParameters</a></div><div class="ttdeci">void ReadParameters()</div><div class="ttdef"><b>Definition:</b> ROMSX.cpp:419</div></div>
<div class="ttc" id="aclassROMSX_html_ae3543d5a8078423ea4ac399ee53a67b9"><div class="ttname"><a href="classROMSX.html#ae3543d5a8078423ea4ac399ee53a67b9">ROMSX::ReadParameters</a></div><div class="ttdeci">void ReadParameters()</div><div class="ttdef"><b>Definition:</b> ROMSX.cpp:422</div></div>
<div class="ttc" id="aclassROMSX_html_ae387d14721ffd15c0a57002fdbc150cc"><div class="ttname"><a href="classROMSX.html#ae387d14721ffd15c0a57002fdbc150cc">ROMSX::PlotFileVarNames</a></div><div class="ttdeci">amrex::Vector&lt; std::string &gt; PlotFileVarNames(amrex::Vector&lt; std::string &gt; plot_var_names) const</div><div class="ttdef"><b>Definition:</b> Plotfile.cpp:78</div></div>
<div class="ttc" id="aclassROMSX_html_ae3894b8be6ddf628ddd718abfc4c36ad"><div class="ttname"><a href="classROMSX.html#ae3894b8be6ddf628ddd718abfc4c36ad">ROMSX::input_bndry_planes</a></div><div class="ttdeci">static int input_bndry_planes</div><div class="ttdef"><b>Definition:</b> ROMSX.H:893</div></div>
<div class="ttc" id="aclassROMSX_html_ae7cb5e92951f1b72d818578160d0f993"><div class="ttname"><a href="classROMSX.html#ae7cb5e92951f1b72d818578160d0f993">ROMSX::bndry_output_planes_per</a></div><div class="ttdeci">static amrex::Real bndry_output_planes_per</div><div class="ttdef"><b>Definition:</b> ROMSX.H:889</div></div>
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