more thorough testing #537
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name: CMake (rapid build on push) | |
on: | |
env: | |
BUILD_TYPE: Release | |
jobs: | |
build: | |
name: | |
${{ matrix.platform }}, Parser option ${{ matrix.xml_parser_option }}, | |
with namespaces ${{ matrix.with_namespace}}, strict includes ${{ | |
matrix.strict }}, with examples ${{ matrix.with_examples}}, package option | |
${{ matrix.package_option}}, c++ standard ${{matrix.cpp_standard}} | |
strategy: | |
fail-fast: false | |
matrix: | |
platform: [windows-latest, macos-latest, ubuntu-latest] | |
xml_parser_option: ["-DWITH_EXPAT"] | |
with_namespace: ["True"] | |
strict: ["True"] | |
with_examples: ["True"] | |
package_option: ["-DWITH_ALL_PACKAGES=ON"] | |
language_bindings: | |
[ "-DWITH_JAVA=True -DWITH_CSHARP=True"] | |
cpp_standard: [98, 20] | |
runs-on: ${{ matrix.platform }} | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: seanmiddleditch/gha-setup-ninja@master | |
- name: Add msbuild to PATH (Windows) | |
if: matrix.platform == 'windows-latest' | |
uses: ilammy/msvc-dev-cmd@v1 | |
### configure the operating system ### | |
- name: Cache Windows dependencies and SWIG | |
# On Windows, the dependencies live inside the source folder, ie `.`. | |
# For the CI, we put SWIG there too, for simplicity. | |
if: matrix.platform == 'windows-latest' | |
id: cache-win-dependencies-static | |
uses: actions/cache@v4 | |
with: | |
path: | | |
./dependencies | |
key: ${{ runner.os }}-dependencies-static | |
- name: Download pre-built Windows dependencies and SWIG | |
# Windows dependencies have to be in a subfolder called `dependencies`, directly under the git repository root. | |
# also gets SWIG, completing the set of dependencies needed for windows | |
if: | |
matrix.platform == 'windows-latest' && | |
steps.cache-win-dependencies-static.outputs.cache-hit != 'true' | |
shell: bash | |
run: | | |
curl -L https://github.com/sbmlteam/libSBML-dependencies/releases/download/latest/libSBML-dependencies-1.0.1-x64-Release-static.zip > dependencies.zip | |
unzip dependencies.zip | |
mv libSBML-dependencies-1.0.1-x64-Release-static dependencies | |
- name: Download SWIG on Windows | |
if: matrix.platform == 'windows-latest' | |
shell: bash | |
run: | | |
curl -L https://sourceforge.net/projects/swig/files/swigwin/swigwin-4.0.2/swigwin-4.0.2.zip/download > swig.zip | |
unzip -o swig.zip -d swig | |
echo $GITHUB_WORKSPACE"/swig/swigwin-4.0.2/" >> $GITHUB_PATH | |
- name: setup Windows environment | |
# this is separate from the SWIG download itself, because it needs to be added to the path also when SWIG is cached | |
if: matrix.platform == 'windows-latest' | |
shell: bash | |
run: | | |
echo RUNTIME_LINKING_OPTION="-DWITH_STATIC_RUNTIME=ON" >> "${GITHUB_ENV}" | |
echo PYTHON_LINKING_OPTION="-DWITH_PYTHON=ON" >> "${GITHUB_ENV}" | |
- name: Install Ubuntu dependencies | |
# ubuntu already has SWIG and libxml2 by default | |
if: matrix.platform == 'ubuntu-latest' | |
shell: bash | |
run: | | |
sudo apt-get update | |
sudo apt-get install -y check ccache | |
echo PYTHON_LINKING_OPTION="-DWITH_PYTHON=ON -DPYTHON_USE_DYNAMIC_LOOKUP=ON" >> "${GITHUB_ENV}" | |
echo R_BINDINGS="-DWITH_R=True" >> "${GITHUB_ENV}" | |
git clone https://github.com/libexpat/libexpat | |
cmake -G Ninja -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DEXPAT_BUILD_TESTS=OFF -DEXPAT_BUILD_TOOLS=OFF -DEXPAT_BUILD_EXAMPLES=OFF -DEXPAT_SHARED_LIBS=OFF -DCMAKE_INSTALL_PREFIX=./dependencies -B libexpat -S libexpat/expat | |
cmake --build libexpat | |
cmake --install libexpat | |
- name: Install MacOS dependencies | |
# MacOS already has libxml2 by default | |
if: matrix.platform == 'macos-latest' | |
shell: bash | |
run: | | |
brew install check swig ccache | |
echo PYTHON_LINKING_OPTION="-DPYTHON_USE_DYNAMIC_LOOKUP=ON" >> "${GITHUB_ENV}" | |
### setup ccache, not on Windows ### | |
- name: Prepare ccache timestamp | |
if: matrix.platform != 'windows-latest' | |
id: ccache_cache_timestamp | |
shell: cmake -P {0} | |
run: | | |
string(TIMESTAMP current_date "%Y-%m-%d-%H;%M;%S" UTC) | |
message("::set-output name=timestamp::${current_date}") | |
- name: Set ccache cache directory | |
if: matrix.platform != 'windows-latest' | |
shell: bash | |
run: | | |
echo "CCACHE_DIR=${{runner.workspace}}/.ccache" >> "${GITHUB_ENV}" | |
echo "COMPILER_LAUNCHER=ccache" >> "${GITHUB_ENV}" | |
- name: cache ccache files | |
if: matrix.platform != 'windows-latest' | |
uses: actions/cache@v4 | |
with: | |
path: ${{runner.workspace}}/.ccache | |
key: | |
${{ runner.os }}-${{ steps.ccache_cache_timestamp.outputs.timestamp | |
}} | |
restore-keys: | | |
${{ runner.os }}-${{ steps.ccache_cache_timestamp.outputs.timestamp }} | |
${{ runner.os }}- | |
### build the project ### | |
- name: Create Build Environment | |
run: cmake -E make_directory ${{runner.workspace}}/build | |
- name: Configure CMake for the selected XML_parser | |
shell: bash | |
working-directory: ${{runner.workspace}}/build | |
run: | | |
cmake $GITHUB_WORKSPACE \ | |
-G "Ninja" \ | |
-DCMAKE_BUILD_TYPE=$BUILD_TYPE \ | |
-DCMAKE_C_COMPILER_LAUNCHER=${COMPILER_LAUNCHER} \ | |
-DCMAKE_CXX_COMPILER_LAUNCHER=${COMPILER_LAUNCHER} \ | |
-DCMAKE_CXX_STANDARD=${{matrix.cpp_standard}} \ | |
-DWITH_CHECK=True \ | |
-DWITH_CPP_NAMESPACE=${{matrix.with_namespace}} \ | |
-DLIBSBML_USE_STRICT_INCLUDES=${{matrix.strict}} \ | |
-DWITH_EXAMPLES=${{matrix.with_examples}} \ | |
-DWITH_LIBXML=OFF \ | |
${{matrix.xml_parser_option}}=True \ | |
${{matrix.package_option}} \ | |
${{matrix.language_bindings}} \ | |
${R_BINDINGS} \ | |
${RUNTIME_LINKING_OPTION} \ | |
${PYTHON_LINKING_OPTION} | |
- name: Build | |
working-directory: ${{runner.workspace}}/build | |
shell: bash | |
run: cmake --build . --config $BUILD_TYPE | |
### run tests ### | |
- name: Test | |
if: matrix.platform == 'macos-latest' | |
working-directory: ${{runner.workspace}}/build | |
shell: bash | |
run: ctest -V -C $BUILD_TYPE -E test_cs | |
- name: Test | |
if: matrix.platform != 'macos-latest' | |
working-directory: ${{runner.workspace}}/build | |
shell: bash | |
run: ctest -V -C $BUILD_TYPE | |
manylinuxbuild: | |
name: | |
${{ matrix.container }}, Parser option ${{ matrix.xml_parser_option }}, | |
with namespaces ${{ matrix.with_namespace}}, strict includes ${{ | |
matrix.strict }}, with examples ${{ matrix.with_examples}}, package option | |
${{ matrix.package_option}} | |
strategy: | |
fail-fast: false | |
matrix: | |
platform: [ubuntu-latest] | |
xml_parser_option: ["-DWITH_LIBXML"] | |
with_namespace: ["True"] | |
strict: ["True"] | |
with_examples: ["True"] | |
package_option: ["-DWITH_STABLE_PACKAGES=ON"] | |
cpp_standard: [98, 20] | |
language_bindings: | |
["-DWITH_JAVA=True -DWITH_PYTHON=True"] | |
container: ["quay.io/pypa/manylinux_2_28_x86_64"] | |
runs-on: ${{ matrix.platform }} | |
container: ${{ matrix.container}} | |
steps: | |
- uses: actions/checkout@v4 | |
- name: install Swig 4 from source | |
run: | | |
yum install -y pcre-devel | |
echo "SWIG_DIR=/usr/local/swig/" >> "${GITHUB_ENV}" | |
curl -L https://sourceforge.net/projects/swig/files/swig/swig-4.0.2/swig-4.0.2.tar.gz/download > swig.tar.gz | |
tar -zxvf swig.tar.gz | |
cd swig-4.0.2/ | |
./configure --disable-dependency-tracking --prefix=$SWIG_DIR | |
make clean | |
make -j 2 | |
make install | |
swig -version | |
- name: install CMake using pip | |
run: | | |
/opt/python/cp38-cp38/bin/pip install cmake | |
ln -s /opt/python/cp38-cp38/bin/cmake /usr/bin/cmake | |
ln -s /opt/python/cp38-cp38/bin/ctest /usr/bin/ctest | |
cmake --version | |
ctest --version | |
- name: Install dependencies, configure, build | |
run: | | |
yum install -y libxml2-devel check-devel java-devel | |
cd .. | |
mkdir build | |
cd build | |
cmake ../libsbml \ | |
-DCMAKE_BUILD_TYPE=$BUILD_TYPE \ | |
-DCMAKE_CXX_STANDARD=${{matrix.cpp_standard}} \ | |
-DWITH_CHECK=True \ | |
-DWITH_CPP_NAMESPACE=${{matrix.with_namespace}} \ | |
-DLIBSBML_USE_STRICT_INCLUDES=${{matrix.strict}} \ | |
-DWITH_EXAMPLES=${{matrix.with_examples}} \ | |
-DWITH_LIBXML=OFF \ | |
${{matrix.xml_parser_option}}=True \ | |
${{matrix.package_option}} \ | |
${{matrix.language_bindings}} \ | |
-DPYTHON_EXECUTABLE=/opt/python/cp38-cp38/bin/python \ | |
-DPYTHON_INCLUDE_DIR=/opt/python/cp38-cp38/include/python3.8/ \ | |
-DWITH_STATIC_RUNTIME=ON \ | |
-DPYTHON_USE_DYNAMIC_LOOKUP=ON | |
cmake --build . --config $BUILD_TYPE | |
- name: Test | |
run: | | |
cd ../build | |
ctest -V -C $BUILD_TYPE |